Slackia exigua: M1L65_06845
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Entry
M1L65_06845 CDS
T11352
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
seig Slackia exigua
Pathway
seig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1L65_06845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seig03019
]
M1L65_06845
Enzymes [BR:
seig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M1L65_06845
Messenger RNA biogenesis [BR:
seig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M1L65_06845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
PAC2
Motif
Other DBs
NCBI-ProteinID:
XQL99582
LinkDB
All DBs
Position
1538269..1540449
Genome browser
AA seq
726 aa
AA seq
DB search
MLSHGMPHAPYPIGRNRPERTRYKENIIATFNDLGLSEKALSAVVDLGYSEPTPVQEKAI
PVVLEGRDLIAAAKTGTGKTAAFSLPTLDQLRYRADDEGPLMVIVTPTRELAQQIADTCA
PIARRTNHSTVVLLGGVGYGPQIKKLRAGADIIIATPGRLLDLMRQGAADLGNVEKLVLD
EADRMLDMGFWPQVSEIVDAIPTERQTLLFSATIDRSQDKVMFSLLKDPEIIEIAHRGDV
ADLIDQYVIKTDRRLKPALLNSFVRERGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIH
ADRSQAQRARALDNFREGKTHVLVATDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRT
GRAGARGYAVSFVTPDTRNLLKSIQKFIDQTIEVLDFAVSDDAMEPVGEDHALAGVVDDE
KGARGGRGKKRGKDDRGRDKDRKRGRNGKRGKRDDDARGKKAKKDRRKASKADGRSEGFE
HVDVRRDERFDADFDAKFNKKSNAAFAEGRDEKRSRKNGDKKHPGKGFGKDGKKKKRAGA
SDRDRAALNAAADSFGGGRSPRPKGDHTYDYAAFSKPKRPKAPKGERFGDSSRFDDERPS
FKKHDGRKGFGKGASSDRDKNDRYRSDDRFGRKDSKRSNGFGRDAKRGGDARDRKPFESK
VGRGFGSARRSEGEDRSFGRRGRDGQDAWKRSGRPSMGSRPNGGRPGRPKRGGSAGGPRG
RGSNAR
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgctgtctcacgggatgccccacgctccctatccaatcgggcggaatcgacccgaacgc
actcgctacaaggagaacatcatagctactttcaatgacctcggactttccgagaaggct
ctctctgccgtcgtcgacctcgggtattccgagccgaccccggttcaggagaaggccatc
cccgtcgtgctcgaagggcgcgacctcatcgcagccgccaagaccggcaccggcaagacg
gccgcattttcccttcccaccctggaccagctgaggtatcgagccgacgacgaaggtccg
ctcatggtcatcgtgacgccgacgcgcgagcttgcgcagcagatcgccgatacctgcgcg
cccatcgcccgccgcacgaaccacagcaccgtcgtgctgctcggcggcgtcggatacggc
ccccagatcaagaagctcagggccggcgccgacatcatcatcgcgacgccggggcgcctg
ctcgacctcatgcgtcagggcgcggcggacctcggcaacgttgagaagctcgtcctcgac
gaggccgaccgcatgctcgacatgggcttttggcctcaggtcagcgaaatcgtcgatgcc
atccccaccgaacgccagacgctgctgttctcggccaccattgaccgctcacaggacaag
gttatgttctcgctgctcaaggatcccgagatcatcgagatcgcccatcgcggcgatgtt
gccgacctgatcgatcagtacgtcatcaagaccgatcgccgcctgaagcctgccctgctc
aactcgttcgtccgggaacgcggcggattccgcgtcatcgtgttcacgcgcacgaagggc
ggcgccgacaactgcacgaaacgcctgcgcaagatcggcatcgccaccgaggccatccat
gcggaccgttcccaggcccagcgggcccgcgccctcgacaacttccgcgagggcaagacg
cacgtgctcgtcgccaccgacgtgctttcgcgcggcatcgacgtgcccgaagtcgactac
gtcatcaactacgacctgcccatgatgcccgaggactacgtccatcgcatcgggcgcacg
ggtcgcgccggcgcgcgcggatacgccgtgtccttcgtcacgcccgatacccgcaatctg
ctgaagagcatccagaaattcatcgatcagaccatcgaggtcctcgatttcgccgtgagc
gatgatgcgatggagcctgtcggcgaagaccatgcgctcgccggcgtcgtggacgatgaa
aagggcgcgcgcggcggacgcggcaagaaacgcggtaaggacgaccgcggtcgcgacaag
gaccgcaagaggggtcgcaacggcaagcgcggaaagcgcgacgacgatgcccgcggcaag
aaggcgaagaaggaccgccgcaaagcatcgaaggcggatggtcgttccgaaggattcgag
cacgtggacgtgcgtcgcgacgagcgctttgacgcggatttcgacgccaagttcaacaag
aagtcgaatgcggcattcgccgaagggcgcgatgagaagcgctctcgcaagaacggcgac
aagaagcaccccggcaaagggttcgggaaagacggcaagaaaaagaaacgcgcaggcgca
tccgaccgtgatcgcgctgccctgaacgcggcggccgactccttcggcggcggacgttcg
ccccgccccaaaggcgatcatacctacgattacgcggcattttccaaaccgaagaggccc
aaggcacccaagggggaacgattcggcgactcgagcaggttcgacgacgagcgtccctcc
ttcaaaaagcatgacgggcgcaaaggcttcggcaagggcgcatcgagcgatcgcgacaag
aacgaccgctaccgctccgacgatcgcttcggccgcaaggattcgaaacgttcgaacggt
ttcggcagggacgcgaaacgcggaggcgatgcgcgcgaccgcaagcccttcgaaagcaag
gtaggacgcgggttcggttccgcccgccgctccgaaggcgaagaccgctccttcggccgc
cggggccgcgacggccaagacgcttggaaacgcagcggcaggccttcgatgggaagccgc
ccgaacggcggcaggccgggacgtcccaagcgcggcggatcggccggcggccctcgaggc
cgaggttccaacgcgcggtag
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