Salmonella enterica subsp. enterica serovar Typhimurium UK-1: STMUK_0191
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Entry
STMUK_0191 CDS
T01743
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sej
Salmonella enterica subsp. enterica serovar Typhimurium UK-1
Brite
KEGG Orthology (KO) [BR:
sej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sej03019
]
STMUK_0191 (hrpB)
Enzymes [BR:
sej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
STMUK_0191 (hrpB)
Messenger RNA biogenesis [BR:
sej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
STMUK_0191 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
HA2_N
Motif
Other DBs
NCBI-ProteinID:
AEF06124
UniProt:
A0A3Z2F8V3
LinkDB
All DBs
Position
218303..220777
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AA seq
824 aa
AA seq
DB search
MLQCGAKKVNPVEPFVTSLPVAAVLPELLTALKIAPQVLLSAPTGAGKSTWLPLQLLQQG
PVAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRLEVVTEGVLT
RMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQGLRDDLRLLIMSATLDNDRLC
QRLPDAPTIVSEGRAFPVERRYQPLAAHLRFDEAVAMATAELLRNENGSLLLFLPGVGEI
QRVHEHLASRVGSDVLLCPLYGALSLEAQRKAIVPAPAGMRKVVLATNIAETSLTIEGIR
LVVDSAQERVARFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHLLAKEQAERAA
AQSDPEILHSDLSGLLMEVLQWGCHDPASLFWLDRPPEVNLQAARRLLLMLGALEGERLS
ARGRKMAAMGNDPRLAAMLVNAGEGDSAATAAMLAAILEDPPRGGGTDLSVVFSRRQPGW
QQRSQQLLKRLQVRNGEPDSALIMPLLARAFSDRIARRRGQEGRYQLANGMGAMLDADDA
LGRHEWLIAPLLLQGSASPDARILLAQPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAW
RRMRIGQLTVSVQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLP
EYDWPAVDEASLLATLENWLLPHMTGVQSLRGLKSLNVNQALRGLLDYAMLQRLDSELPG
HYTVPTGSRITIRYHEDNPPALAVRMQEMFGEAKTPTIAQGRVPLVLELLSPAQRPLQIT
RDLSAFWQGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgcggcgcaaagaaagttaaccccgtggagccgtttgtgacgtcattgccc
gttgccgccgtattgcctgaattgttgacagccctaaaaatcgcgccgcaggttttgttg
tccgcgcctaccggggcggggaaatccacctggctgccgttgcaactcctgcaacagggg
ccggttgctggaaaaatcctcctgcttgaaccgcgtcgtctggcggcgcgtaatgtcgca
cagcgtctggcggaagcgttgaatgaaaagcctggcgaaacggtaggttaccggatgcgc
gcgcaaagctgcgtggggccgcgtacccggctggaagtggtgaccgaaggcgtattgacc
agaatgattcagcgcgatcccgaattacgcggcgtggggctggtgatactggatgaattt
catgagcgcagtttacaggcggatttagcgttggcgctgttgctggatatccagcaaggg
ctccgtgacgatctcaggctgttaatcatgtctgcgacgctggataacgacaggctttgt
cagcgactgcctgatgcgccgacgatcgtctcggaggggcgcgcgttcccggtggagcga
cgttatcagccgcttgcggcgcatttgcgttttgatgaagccgtcgcgatggcgacagcg
gaactgctgcgcaatgaaaacggttcgctgctgctatttttacccggcgtaggcgaaata
cagcgcgttcatgaacatctggcgtcgcgggtagggagcgatgtcctgctttgtccgctg
tatggcgcattgtctctggaagcgcaacgcaaagcgattgttccggcacccgccgggatg
cgtaaagtggtgttggcgactaacattgccgaaaccagtttgacgattgaagggattcgt
ctggtcgtcgatagcgctcaggagcgcgtggcgcgatttgacgcgcgaacgggactgacg
cggctggttacgcagcgtatcagtcaggcatcaatgacgcagcgcgcggggcgcgccgga
cgactggcgccgggtatctgtttacatctgctggccaaagaacaggcggagcgggcggcg
gcgcaaagcgatccggaaatcttacacagcgacctttccggtttattgatggaggtgttg
cagtggggatgtcacgatccggcatcgcttttctggctggacaggccgccggaggtgaat
cttcaggccgcccgccgtttattattgatgttaggcgcgctggagggcgagcggttaagc
gcgcggggccggaaaatggcggcaatgggtaacgatccgcgcctggcggcgatgttagtc
aacgccggcgagggcgatagcgccgccactgccgccatgctcgcggccatccttgaggac
ccgccgcgcggcggcggtacggatttaagcgtagtattttcgcggcgacagccgggctgg
cagcagcgtagccagcagcttttaaaacggctgcaggtgcgtaatggcgagccggatagc
gcgcttattatgccgctgttggccagagcgtttagcgaccgcatcgcgcggcgtcgtggt
caggaagggcgctatcagttagccaatggtatgggcgcgatgttagatgcggatgacgcg
ttgggacgtcatgaatggctgatcgcgccgctgttactgcaaggtagcgcctcgccggac
gcccgaatattgttggcgcagccgctggatattgcctcgctgattcaggcgtgtcctgat
ttactgcgccagtccgacacggttgaatgggacgaggcgcagggaacgttgaaagcatgg
cgcagaatgcgtattggacagttgacggttagcgttcagccactggcgaagccgtctgaa
gaggagcttcatcaggcgatgctgaacggcatccgcgataaaggtctgtccgtccttaac
tggacgccggaagcggagcagttccgtctgcgtctgcactgtgcggcgaaatggctgccg
gaatatgactggcctgccgtggatgaggcgtcgctgctggcgactctggaaaattggttg
ctgccgcacatgacaggcgtacagtcgttacgagggctaaaatccctgaacgttaatcag
gcgttacggggactgcttgactatgccatgctgcaacgtctggatagtgaactgcctggg
cattacactgtgccgacgggaagccgaataacgattcgttatcatgaagataacccgccc
gcgctggcggtcagaatgcaggaaatgtttggcgaagcgaagaccccaaccatcgctcag
ggccgcgtgccgctggtgctggaactgctttcgccagcgcagcgaccgctacagattacg
cgcgatttaagcgctttctggcagggggcgtatcgcgaagtgcaaaaagagatgaagggc
cgttaccccaaacatgtctggccggacgatccggcgaatacggccccaacgcggcgcacg
aagaagtattcgtga
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