Salmonella enterica subsp. enterica serovar Typhimurium UK-1: STMUK_1686
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Entry
STMUK_1686 CDS
T01743
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sej
Salmonella enterica subsp. enterica serovar Typhimurium UK-1
Brite
KEGG Orthology (KO) [BR:
sej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sej03032
]
STMUK_1686 (topA)
03400 DNA repair and recombination proteins [BR:
sej03400
]
STMUK_1686 (topA)
Enzymes [BR:
sej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
STMUK_1686 (topA)
DNA replication proteins [BR:
sej03032
]
Prokaryotic type
DNA Topoisomerases
STMUK_1686 (topA)
DNA repair and recombination proteins [BR:
sej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
STMUK_1686 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AEF07586
UniProt:
A0A3Z2F6Z7
LinkDB
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Position
complement(1768673..1771270)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDARYSRVVFNEITKNAIRQAFEQPGELNINRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGEALPLQVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYIGDNFGKKYLPDNPNQYASKEN
SQEAHEAIRPSDVAVMAESLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGEF
RLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDALTLLELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHQAEWKAVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTVVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggtgaaatccagcgtgggtcatatccgtgatttgccgaccagt
ggctcagcagctaaaaagagcgccgactctacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaaccgtatgggggttgacccgtggcacaactgggat
gcgcactatgaagtgctgcccggtaaagagaaggtcgtctctgaactgaaacagttggcg
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagtgatcggcggcgatgacgcgcgctacagtcgcgtagtctttaac
gaaataaccaaaaatgccattcgccaggcgtttgaacagccgggcgagctgaacattaac
agggtcaacgcccagcaagcgcgccgctttatggatcgcgtggtaggctatatggtctcg
ccgctgctgtggaaaaagatcgcccgtggtttgtcggcaggtcgcgttcagtctgtcgcg
gtccgtctggtcgttgaacgcgagcgcgagattaaagcgtttgttccggaagagttctgg
gaaattgacgctaatacgacgacgccgtctggcgaggcactaccgctacaggtgacgcat
cagaacgacaagccattccggccggtaaatcgcgagcagacgcttgccgccgtcagcttg
ctggaaaaagcgcgctatagcgtactggagcgtgaagacaaaccgaccagcagcaaacct
ggcgcgccgtttatcacctccacgctacaacaggcggccagcacccggctgggctttggc
gtgaagaaaaccatgatgatggcgcagcgtctgtatgaggcgggctacatcacctatatg
cgtaccgactccaccaacctgagtcaggatgcggtcaacatggtgcgcggttatattggc
gataatttcggcaagaaatacctgccggataacccgaaccagtacgccagcaaagaaaac
tctcaggaagcgcacgaagcgatccgtccttccgacgttgctgtcatggcggagtctctg
aaagacatggaggctgacgcgcagaagttgtatcagctaatttggcgtcagtttgtcgcc
tgtcagatgacgccagcacaatatgactccactacgcttaccgttggcgcaggcgaattc
cgtctgaaagcgcgtgggcgtattttgcgctttgacggctggacaaaagtgatgccggcg
ctgcgtaaaggcgatgaagatcgcacattgcctgccgtgaataagggcgatgcgctgacg
ctacttgaattgacgcctgctcagcactttactaaaccgccagcccgtttcagcgaggct
tctctggttaaagaacttgagaagcgtggtattggtcgtccgtctacctatgcgtcgatt
atctcgaccattcaggatcgcggctatgttcgcgttgaaaaccgtcgcttctatgcggaa
aaaatgggtgaaatcgtcaccgaccggctggaagaaaacttccgcgaattgatgaactac
gattttaccgcgcagatggaagatagtctggatcaggttgcgaatcaccaggccgagtgg
aaagcggtactggataacttcttcagcgattttactcagcagctcgataaagccgagaaa
gatccggaagaaggggggatgcgtcctaaccagatggtgctgaccagcatcgactgtcca
acctgtggccgtaaaatgggaattcgtactgccagtacgggggttttccttggttgttca
ggttatgcgctttcgccgaaagagcgttgtaaaacgaccattaacctggtgccggaaaat
gaagttctgaacgtgctggaaggcgacgacgccgaaaccaacgccctgcgcgccaagcgg
cgctgtcagaagtgcggtacggcgatggacagctatctgatcgatccgaagcgtaaattg
catgtgtgtggtaataacccgacctgtgacggctacgagattgaagaaggcgagtttcgc
atcaaagggtatgacggcccgatcgttgagtgtgagaaatgtggttccgaaatgcacctg
aaaatggggcgttttggtaagtacatggcctgtactaacgacgaatgtaaaaatacccgt
aagatcttgcgtaacggcgaagttgcgccgccgaaggaagatcctgttccattaccggaa
ctgccgtgtgaaaaatcggacgcgtactttgtgctgcgcgatggcgccgcagggatattc
ctggcggccaatacgttcccgaaatcacgcgaaactcgcgcgccattagtcgaggagctg
taccggttccgcgatcgcctgccggaaaaactgcgttatctggcggatgcgccgcagcag
gacccggaaggtaataaaaccgttgttcgctttagccgcaaaacaaaacagcagtacgtt
gcggcggaaaaagacgggaaggcgacgggatggtcagcgttcttcgtcgacggcaagtgg
gttgaaggcaagaaataa
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