Salmonella enterica subsp. enterica serovar Typhimurium UK-1: STMUK_3903
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Entry
STMUK_3903 CDS
T01743
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sej
Salmonella enterica subsp. enterica serovar Typhimurium UK-1
Pathway
sej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STMUK_3903 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sej03021
]
STMUK_3903 (rho)
03019 Messenger RNA biogenesis [BR:
sej03019
]
STMUK_3903 (rho)
Transcription machinery [BR:
sej03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
STMUK_3903 (rho)
Messenger RNA biogenesis [BR:
sej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STMUK_3903 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AEF09740
UniProt:
A0A3Z2F5F6
LinkDB
All DBs
Position
4086881..4088140
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaagt
atggggctggaaaacctggcccgtatgcgcaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggcgacggtgtgctggagatattgcaggat
ggatttggtttcctccgttctgcagacagctcctacctcgccggtcctgatgatatctac
gtttcccccagccaaatccgccgtttcaacctccgcactggtgataccatttctggtaag
attcgcccgccgaaagaaggtgaacgctattttgcgctgttgaaagttaacgaagttaac
tacgacaaaccggaaaacgcccgtaacaaaatcctctttgagaacttaaccccgctgcac
gcaaactctcgtctgcgtatggagcgtggtaacggttctaccgaagacttaacggcgcgc
gttctggatctggcttcgccgatcggtcgcggccagcgcggtctgattgtcgcgccgccg
aaagcgggtaaaaccatgctgctgcagaacatcgcgcagagcatcgcgtataaccacccg
gactgcgtgctgatggtgctgctgattgacgaacgtccggaagaagtgaccgagatgcag
cgtctggtgaaaggcgaagtggttgcttctacctttgacgaaccggcatcccgccacgtt
caggttgccgaaatggttatcgagaaggcgaagcgtctggttgaacacaagaaagacgtt
atcatcctgctcgactccatcacccgtctggcgcgcgcctacaacaccgtggtgccggct
tccggtaaagtattgaccggtggtgtggacgctaacgccctgcatcgtccgaagcgtttc
ttcggcgcggcgcgtaacgtggaagagggcggtagcctgactatcatcgcgacggcgcta
atcgataccggttccaagatggacgaagttatctacgaagagtttaaaggcaccggtaac
atggagctgcatctctcgcgtaagatcgctgaaaaacgtgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagagctgctcaccactcaggaagagctgcagaaaatg
tggatcctgcgtaaaatcatccatccgatgggtgaaattgacgcgatggaattcctcatt
aacaaactggcgatgaccaaaactaatgacgactttttcgagatgatgaagcgctcataa
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