Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601: SSPA3501
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Entry
SSPA3501 CDS
T00756
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
sek
Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
Pathway
sek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSPA3501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sek03021
]
SSPA3501
03019 Messenger RNA biogenesis [BR:
sek03019
]
SSPA3501
Transcription machinery [BR:
sek03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SSPA3501
Messenger RNA biogenesis [BR:
sek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SSPA3501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
CAR61779
UniProt:
A0A6C7I7E1
LinkDB
All DBs
Position
3898815..3900074
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaagt
atggggcttgaaaacctggcccgtatgcgcaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggcgacggtgtgctggagatattgcaggat
ggatttggtttcctccgttctgcagacagctcctacctcgccggtcctgatgatatctac
gtttcccccagccaaatccgccgtttcaacctccgcactggtgataccatttctggtaag
attcgcccgccgaaagaaggtgaacgctattttgcgctgttgaaagttaacgaagttaac
tacgacaaaccggaaaacgcccgtaacaaaatcctctttgagaacttaaccccgctgcac
gcaaactctcgtctgcgtatggagcgtggtaacggttctaccgaagacttaacggcgcgc
gttctggatctggcttcgccgatcggtcgcggccagcgcggtctgattgtcgcgccgccg
aaagcgggtaaaaccatgctgctgcagaacatcgcgcagagcatcgcgtataaccaccca
gactgcgtgctgatggtgctgctgattgacgaacgtccggaagaagtaaccgagatgcag
cgtctggtgaaaggcgaagtggttgcgtctacctttgacgaaccggcatcccgccacgtt
caggttgccgaaatggttatcgagaaggcgaaacgtctggttgaacacaagaaagacgtt
atcatcctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtggtgccggct
tccggtaaagtattgaccggtggtgtggacgctaacgccctgcatcgtccgaagcgtttc
ttcggcgcggcgcgtaacgtggaagagggcggtagcctgactatcatcgcgacggcgcta
atcgataccggttccaagatggacgaagttatctacgaagagtttaaaggcaccggtaac
atggagctgcatctctcgcgtaagatcgctgaaaaacgtgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagagctgctcaccactcaggaagagctgcagaaaatg
tggatcctgcgtaaaatcatccatccgatgggtgaaattgacgcgatggaattcctcatt
aacaaactggcgatgaccaaaactaatgacgactttttcgagatgatgaagcgctcataa
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