Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078: SPUL_3224
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Entry
SPUL_3224 CDS
T01740
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
sel
Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078
Pathway
sel02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sel00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SPUL_3224 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sel03021
]
SPUL_3224 (rpoD)
Transcription machinery [BR:
sel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SPUL_3224 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
AET55490
LinkDB
All DBs
Position
3227860..3229707
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AA seq
615 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTA
THVGSELSQEDLDDDEDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAK
GRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
attgaagatatcatccaaatgatcaacgacatgggtattcaggtaatggaagaagcgcct
gatgccgatgatctgctgctggctgaaaataccaccagcaccgatgaagatgcggaagaa
gctgctgcacaagttctgtccagtgttgagtctgaaatcggtcgtacgactgacccggta
cgcatgtatatgcgtgaaatgggcactgttgaactgttgacccgggaaggcgaaatcgac
atcgctaaacgtatcgaagacgggatcaaccaggttcaatgctccgttgccgaatacccg
gaagccattacctatctgctggaacagtacgatcgcgttgaggctgaagaggctcgtttg
tccgatcttatcaccggctttgtcgatccgaacgcggaagaagagatggcgccgaccgca
actcacgtcggttctgaactctcccaggaagacctggatgatgacgaagacgaagatgaa
gaagacggcgacgatgacgccgccgatgacgacaacagcattgaccctgaactggcacgc
gaaaaattcgctgagctgcgcgcgcaatacgtcgttacgcgcgacaccatcaaagcgaaa
ggccgcagccatgctgccgcgcaggaagagattctgaagctgtctgaagtgttcaaacag
ttccgtctggtaccgaagcaattcgactatctggtcaacagtatgcgcgtgatgatggat
cgcgtgcgtacccaggaacgtctgatcatgaagctctgcgtcgagcagtgcaaaatgccg
aagaagaactttatcacgctgtttaccggtaacgaaaccagcgaaacctggttcaacgcc
gctatcgcgatgaacaaaccgtggtcggaaaaactgcacgatgtcgcggaagaagtgcaa
cgctgtctgcaaaaactgcggcagattgaagaagagaccggtctgaccatcgaacaggtg
aaagacatcaaccgtcgaatgtccatcggggaagcgaaagcccgccgtgcgaagaaagag
atggttgaagcgaacttacgtctggttatttctatcgctaagaaatacaccaaccgtggc
ttgcagttccttgatctgattcaggaaggcaacatcggtctgatgaaagcggtagataag
tttgaataccgtcgcggctacaagttctccacctatgcaacctggtggatccgtcaggcg
atcacccgttctatcgccgatcaggcgcgcaccatccgtattccggtgcatatgattgag
accatcaacaagctcaaccgtatttctcgccagatgctgcaagagatgggccgcgagcca
acgccggaagagctggctgaacggatgctgatgccggaagataaaattcgtaaggtgctg
aagattgccaaagagccaatctccatggaaacgccgatcggcgacgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctaccgctggactctgccactaccgag
agcctgcgtgccgccactcacgacgttttggctggcctgaccgctcgtgaagcgaaagtg
ctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaa
cagttcgatgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactg
cgccacccgagccgttctgaagtgctgcgcagcttcctcgacgattaa
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