Selenomonas sp. oral taxon 478: ADJ74_00055
Help
Entry
ADJ74_00055 CDS
T04017
Name
(GenBank) RtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sele
Selenomonas sp. oral taxon 478
Brite
KEGG Orthology (KO) [BR:
sele00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sele03016
]
ADJ74_00055
Enzymes [BR:
sele01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ADJ74_00055
Transfer RNA biogenesis [BR:
sele03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ADJ74_00055
Prokaryotic type
tRNA splicing ligases
ADJ74_00055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKT52965
LinkDB
All DBs
Position
1:complement(8477..9688)
Genome browser
AA seq
403 aa
AA seq
DB search
MERMEIRGRCGTAIAYAKVIEEEAVAQIRRMCDYEFTEGASIRIMPDVHWGKGCTIGTTM
TVRDKVVPNLVGVDIGCGMYTVDLGKGEIDLERFDAAAHFVPSGRNLWDGRQEKFDLLGL
RCYRALKDTKRIARSLNTLGGGNHFIEIDRSADGTNYLVIHTGSRNLGKQVAEYYQNIAI
DLSHGKDELFRARDELIRRYKAEGRRSELQEALKNLNRGFQAKATEIPADLAFLYGSYLD
DYLHDIEICQSFARRNREVIARVLLERTGLTAGEAFHTIHNYIDVEERILRKGAIAAHAG
ERVLIPINMRDGSILAVGRGKPDWNWSAPHGAGRLMSRTAAKENLSMDEFRETMADVYTT
AVNENTLDEAPMAYKSLADIIDVIEDSVDVIEVLKPIYNFKAG
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggaacgcatggagatacgcggacgctgcggcacggcgattgcatacgcaaaggtgatc
gaggaggaagcggtcgcgcagatccgccgcatgtgtgactatgaattcacggagggggcg
agcatccgcatcatgcccgatgtccactggggcaaggggtgcacgatcggcacgacgatg
accgtgcgggacaaggtcgtcccaaacctcgtcggtgtcgacatcggctgcgggatgtat
acggtcgacctcggaaagggggagatcgacctcgaacgcttcgatgcggcggcgcacttc
gtcccgtcggggcgtaatctctgggatgggcggcaggagaaatttgacctcctcgggctg
cgctgctaccgcgccctcaaggatacgaagcgcattgcacgcagccttaacacgctcggc
ggcggcaatcacttcatcgagattgaccgcagcgcggacggcacgaactacctcgtcatc
cacaccggcagccgcaatctcggcaagcaggtcgccgagtactaccagaatatcgccatt
gacctatcgcacggcaaggacgagctcttccgtgcgcgcgacgaactcatccgccgctac
aaggcggaggggcggcgcagcgaactgcaggaggcgctcaagaacctgaaccgtgggttt
caggcaaaggcgacggagattcccgccgacctcgcctttctctacggcagctacctcgat
gactatctacacgacatcgagatctgccagagcttcgcacgacgcaaccgcgaggtcatc
gcgcgtgtcctcctcgaacggacggggctcaccgcaggagaggcattccacaccatccac
aactacatcgacgtggaggagcggattctccgcaaaggcgcaatcgcagcgcacgcgggt
gagcgcgtcctcatcccgatcaatatgcgcgacggcagcatcctcgccgtcgggcgcggc
aagccggactggaactggtcggctccacacggagcggggcggctcatgtcacgcacggcg
gcaaaggaaaacctctcgatggatgagttccgtgaaacgatggcagatgtctatacaaca
gcagttaatgagaacacgctcgacgaggcaccgatggcatacaagtcacttgcggacatc
atcgacgtgattgaggactccgtggacgtgatcgaggtgctgaagccgatctacaatttc
aaagcggggtga
DBGET
integrated database retrieval system
