Selenomonas sp. oral taxon 478: ADJ74_01240
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Entry
ADJ74_01240 CDS
T04017
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sele
Selenomonas sp. oral taxon 478
Pathway
sele03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sele00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADJ74_01240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sele03019
]
ADJ74_01240
03016 Transfer RNA biogenesis [BR:
sele03016
]
ADJ74_01240
Enzymes [BR:
sele01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ADJ74_01240
Messenger RNA biogenesis [BR:
sele03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ADJ74_01240
Transfer RNA biogenesis [BR:
sele03016
]
Prokaryotic type
tRNA degradation factors
ADJ74_01240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_HELZ2
CSD
RNase_II_C_S1
Rho_RNA_bind
VTT_dom
DUF1918
Motif
Other DBs
NCBI-ProteinID:
AKT53180
LinkDB
All DBs
Position
1:complement(256273..258966)
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AA seq
897 aa
AA seq
DB search
MEQEQLDTLKERVYAFMREDAYRPLPEAELRTGLGLPESEGKELSDALAALEAEGAVIRN
RSGLYGLPSRMNLVVGRLSMSPKGFGFIIPDVRETEEETDVFVPGSAMGTAMHGDRVVAR
VTPSEQPGRAREGEIIRILERVNTHIVGTFERSKAFGFVTPDSTKIGRDVFVLKKDFGGA
KTGSKVVVEITKWPEQRRSAEGRVVEVLGKTGDPGVDVLAVMRAYDLDEKFPPDVAEAAA
HCPKDPLPEEYAGRRDRRDFPIVTIDGEDTKDIDDGVYAYEKDGGFFLGVYIADVSHYVR
AGEPLDREAARRGTSVYLVDRVIPMLPKELSNGICSLNEGVDRLSMACEMEIGMDGEVKN
YEIVPCVIHVARRLTYTLVNRVLAGDEPFVSDNGDIRPMLETLRRLREVLRAKRHRRGSI
DFELPEVKVKLDADGHPVALEKRTGSIGESIIEECMLAANETVARHMELKEEPFVYRVHE
TPTSEKIERLQSLLAALGLRLHVDEDGKVRPSDIQQVLDRVKGQPEERIIGAVALRSMQQ
ARYSTASLGHFGLAARYYTHFTSPIRRYPDLLVHRLLRETFATGHIAAEKRERLRALLPE
AAEHSSARERIAIEAERETTDMKKIEYMAQFVGETYEGVISGVTAFGIFVELENGVEGLV
HVSTMVNDYYTYVEDQYAMVGERTGTRYRLGDTVTIIITRADVQARTLDFVLKDNGVYDP
NAAAPAKRGAAPRPAKKDAGAEQTRSPRRRKGERRDVPAAAAGESHGERRRKTRGAHGTS
GSHAQKGDRAAHAAAESVPRKARTDGKPASWRSERGGKPNADRPPRGGRSESRRDDERSG
RDYHRVKVTGLNSAVWPDPPGYRSRSEEPERTEKPRRAPRPARRMNRKTEGGTRGTE
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggaacaactggatacgctcaaggagagggtctacgcctttatgcgggaggac
gcctatcgcccgctgcctgaggcggagctgcgtacggggctggggctcccggagagcgaa
gggaaggagctctccgatgctcttgccgcgcttgaggccgagggtgcggtcatccgcaac
cgcagcggcctttacgggctgccgagccgcatgaatctcgtggtggggcggctctccatg
tcgccgaaggggttcggcttcatcatccccgatgtgcgtgagacggaggaggagacggat
gtctttgtccccggcagtgcgatggggacggcgatgcacggtgaccgcgtggtcgcacgc
gtcacgccgtccgagcagccgggacgcgcgcgtgagggggagatcatccgcatcctcgag
cgcgtcaatacgcatattgtcggcacgttcgagcgcagcaaggcgttcggctttgtcaca
cccgacagcacgaagatcgggcgcgatgtctttgtgctgaaaaaggactttggcggggca
aagacgggcagcaaggtcgtcgtcgagatcacgaagtggccggagcagcgcaggagcgct
gagggacgcgtcgtcgaggtgctcggcaagacgggtgaccccggcgtggacgtgcttgct
gtcatgcgcgcctacgatctcgatgagaagttcccgcccgatgttgcagaggcggcggcg
cactgcccgaaggatccgcttcccgaggagtatgcagggcggcgggatcgacgtgatttc
cccatcgtcacgattgacggcgaggatacaaaggacatcgacgacggtgtctacgcctat
gagaaggacggcgggttcttcctcggcgtctacattgccgatgtcagccactatgtccgt
gcgggcgagccgctcgatcgtgaggcagcgcggcgcgggacgagcgtctatctcgtcgac
cgcgtgattccgatgctcccgaaggagctgtcgaacggaatctgcagcctgaacgagggc
gtagatcgtctctcgatggcgtgcgagatggagatcggcatggacggcgaggtcaagaac
tatgagatcgtgccgtgcgtgatccatgttgcgcgtcgcctaacctatacgctcgtcaac
cgcgtccttgccggtgatgagccgttcgtctcggacaacggcgacatccgcccgatgctt
gagacgcttcgccgtctgcgcgaggtgctgcgtgccaagcgtcatcggcgcggctcgatt
gactttgagctgcccgaggtcaaggtaaagctcgatgccgatggacatcctgtcgcgctc
gaaaagcgtacaggctcgattggcgagtccatcatcgaggagtgcatgctcgcggcaaat
gagaccgtggcgcgtcacatggagctgaaggaagagccgttcgtctaccgcgtgcatgag
acgcccacctctgagaagatcgagcgtctgcagagcctcctcgccgcgctcggcctgcgc
ctccatgtcgatgaggacggcaaggtgcgcccctccgacatccagcaggtgctcgaccgc
gttaagggacagcccgaggagcgcatcatcggggcggtcgccctgcgttcgatgcagcag
gcgcgctattcgacggcgagccttgggcactttggccttgcggcgcgctactatacgcat
tttacctcgccgatccgacgctatcccgacctcctcgtgcatcgtctcctccgcgagacg
tttgccacgggacatatcgcggcggagaaacgcgagcgtctgcgtgcgctcctccccgag
gcggcggagcactcctcagcgcgtgagcgcattgccatcgaggcggagcgcgagacgacc
gatatgaaaaagatcgagtacatggcgcagttcgtgggcgagacctacgagggtgtcatc
agcggcgtgacggcgttcggcatcttcgtcgagctcgagaatggcgtcgaggggctggtc
cacgtctcgaccatggtcaacgattactatacctacgtcgaggatcagtatgcgatggtg
ggcgagcgcacgggcacgcgctaccgcctcggcgatacggtgaccatcatcatcacgcgc
gccgacgtacaggcgcggacgctcgacttcgtcctgaaggacaacggcgtctacgacccg
aacgcggccgctcctgcgaaacgcggcgctgccccgcgccccgcgaagaaggatgcgggg
gcagagcagacgcgcagcccgcgccgcaggaagggcgagcgccgcgacgttcccgccgct
gcagccggcgaaagccatggcgaacggcgcaggaaaacgcgcggcgcacatggtacgagc
ggcagccacgcccagaagggcgaccgcgccgcccatgcggcggcggagagcgtgccgcgc
aaggcacggacggacggcaagccggcctcgtggcgcagtgagcgcggcggaaagccaaac
gcagaccgcccgccacgcggcgggcgcagcgagagccgtcgtgacgatgagcgcagtgga
cgcgactatcaccgcgtcaaggtgacggggctcaacagtgcggtctggcccgatccgccg
ggctaccgcagccggagtgaggagccggagcggacggagaagccgcgccgtgcgccgcgc
cccgcacgccgcatgaaccgcaagacggagggcggcacgcgaggcaccgaatga
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