Selenomonas sp. oral taxon 478: ADJ74_07830
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Entry
ADJ74_07830 CDS
T04017
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sele
Selenomonas sp. oral taxon 478
Pathway
sele03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sele00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ADJ74_07830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sele03400
]
ADJ74_07830
Enzymes [BR:
sele01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADJ74_07830
DNA repair and recombination proteins [BR:
sele03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ADJ74_07830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_30
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AKT54346
UniProt:
A0A0K1FIV5
LinkDB
All DBs
Position
1:1681478..1684771
Genome browser
AA seq
1097 aa
AA seq
DB search
MNTFFSLLRDDPALRQLTEVFAQPAAQTMLHGAAGALKHAAVAAAYDAAPRPLAIVTAGR
DALRAWQEDLTALLPEADVYELPELDRIDFAAPGAAKGLERSAQRMNIMARLLRHEPIIV
LADISAAAQKGLSTTEFSRAALSLRLGQDLPRETLMERLSALGYEHVPEVENVGQFSVRG
GIVDVFPINALSPIRVEFFDTEIDSMREYDPLTKRSIKNIGTASIMPLRAADDNGEACFL
SYLGAAGTSVFDEPSRLMAALEDGVREDAVRAARCFSWAEMTAAGTEGHEVFISLMNRAV
PTCTPQTLIGVQMVPMTAFQRQFSLLESELHRYLGEGMRVLILAGGAEQAARMREMLTLW
KLPTVISRGADAPAEHAVTISPGTLRAGFELSTSRTAVLTEQDIFGRHKARLRRTASAGE
RIRHFREIAPGDYVVHISHGIGKYLGVETIEVAGVHRDYLHIQYGGDDKLFVPTDQVSLL
QKYIGAEGAAPRLHRMGTADWARAQAKAQKSVEDIADHLIELYAARRMAKGHAFSPDDAG
QREFEEAFPYQETDDQLRAIAEIKHDMESEKPMDRLLCGDVGFGKTEVAIRAAYKAAMDG
YQVAVLVPTTVLAQQHYQTFAARFADFAPKVDVVCRFRTLREQAATLRDVARGQVDILIG
THAILNRKRVRFQKLGLLIVDEEQRFGVTQKEKIKEFATGVDVLTLSATPIPRTLHMSLA
GARDMSVIETPPAERLPVQSYVVESSDAMMRGAIERELSRGGQIYFIYNRVESIDRMREH
LQQIVPQARIASAHGQMSEDILEQVMMDFYEGHYDILLATSIIENGIDVANANTIIIYDA
DRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFARLGSGFKIAMR
DLEIRGAGSLLGAQQHGHIAGVGFEMYVKLLEEAVARKKGEKPAPPPVQTVIDLPVEAYL
DGGYIEDAMHKIEVYQKIAAVQTDEDLDALLDELIDRFGEPTAPVLALLDIARIKNAART
FHARSIALKENALDIALPADEKLPLPALMRLDRAFGRRVGPLPEGSGYRIRLAARECRNV
LDTVLEIVQLITGERHE
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatttttttcgcttctgcgggatgatcccgccctccgtcagctgacggaggta
tttgcgcagccggcagcacagaccatgctgcacggtgccgcaggggcattgaagcacgcc
gccgtcgccgccgcctatgatgcagcaccgcgcccgctcgccattgtgacggcgggacgg
gatgcgctgcgcgcgtggcaggaggatctcacggcactcctgcccgaggcggatgtctat
gagctgcccgagctggaccgcattgactttgctgcacccggtgcggcgaaggggctggag
cgctcggcacagcgcatgaacatcatggcgcgtctcctgcgtcatgagccgatcatcgtg
ttggcggacatcagtgcggcggcgcagaaggggctcagcacgacggaattctcccgtgcc
gcactgtcgctgcgcctgggacaagacctcccgcgtgagaccctgatggagcggctgtcg
gcgctcggctatgaacatgtgccggaggtggagaacgtcggacagttcagcgtgcgcggc
ggcattgtggatgtgtttcccatcaatgcgctctcgcccatccgtgtggagttcttcgat
acggagatcgactccatgcgagagtacgatcctctgaccaagcgctccatcaaaaatatc
ggaacggcctccatcatgcctctgcgtgccgcagacgacaatggggaggcctgttttttg
agctatctcggcgcagccggaacaagtgtctttgacgagccgtcacgcctgatggcggcg
ctggaggatggcgtgcgggaggatgccgtgcgtgcggcgcggtgtttctcgtgggcagag
atgaccgccgccggtacggaggggcatgaggtgttcatctcactcatgaatcgcgctgtc
ccgacgtgtacgccgcagacgctcatcggcgtacagatggtgcccatgacggcgtttcag
cggcagttttcgctcctcgagagcgagctgcatcgctatctgggagaggggatgcgcgtc
ctcatcctagcgggcggggcggagcaggccgcgcgaatgcgcgagatgctcacgctctgg
aagctcccgacggtcatttcacgcggcgcagatgcaccggccgaacatgccgtcaccatt
tcgcccggcaccctgcgtgcgggctttgagctgagcacgtctcgcactgctgtcctgacg
gagcaggatatcttcggtcgtcataaggcacggctgcgccgtacagcgtcggcgggagag
cgcatccgccactttcgcgagattgcgcccggcgactacgtggtgcacatctcccacggc
atcgggaagtatctgggcgtggagaccatcgaggtcgccggtgttcaccgcgactatttg
cacatccagtacggcggggatgacaagctcttcgtcccgaccgatcaggtcagtctcctg
caaaagtatatcggtgcagaaggcgctgcgccgcgcctgcaccgcatgggtacggcagac
tgggcacgcgcacaagccaaggcgcagaaatcggtcgaggatatcgccgaccatctgatt
gagctctacgctgcgcggcgcatggcgaagggacatgccttttcgccggatgatgcggga
cagcgcgagttcgaggaggcgtttccgtatcaggagacggacgatcaactgcgcgccatt
gcagagatcaagcacgatatggaaagcgaaaagccgatggatcgcctgctctgcggcgat
gtgggcttcggcaagacggaggttgcgattcgcgcggcgtacaaggcggcgatggacggc
tatcaggtcgccgtgctcgtgccgacaacagttctcgcacagcagcactatcagaccttt
gcggcgcgttttgccgacttcgctccgaaggtggacgttgtctgccgcttccgcacgctg
cgggaacaggcggcgacgctgcgcgatgtggcgcgtggtcaagtggacatcctcatcgga
acacatgcgattcttaatcggaagcgcgtgcgctttcagaagctgggcctgctcatcgtg
gatgaggagcagcgtttcggcgtgacgcagaaggaaaagatcaaggagttcgcgacgggc
gtcgatgtactgacgctctctgcgacgccgattccgcgcacgctgcacatgtcgctcgcg
ggtgcgcgtgatatgagtgtcatcgagacgccgcccgccgagcgcctccctgtgcagtcc
tacgtcgtggagagcagtgatgccatgatgcgcggcgcgatcgagcgtgagctgtcgcgc
ggcgggcagatctactttatctacaaccgcgtggagagcatcgaccggatgcgcgagcac
ctgcagcagattgtaccgcaggcacgtattgcctccgcgcacggacagatgagcgaggat
attttggagcaggtcatgatggacttttacgagggacattatgacatcctgcttgcaacg
agcatcatcgagaacggcatcgatgtcgccaacgcgaatacgatcatcatctacgatgcc
gaccgcttcggcctctcgcagctctatcagatgcgcggacgcgtcggccgctcggcgaag
atggcgtttgcctacttcacgtatcggcgcgacaaggtgctcagcgagacggcggagaag
cgcctacaggcgatgaaggagtttgcacgccttggctcgggctttaagatcgcgatgcgt
gatctcgagatccgcggcgcggggagccttctcggtgcgcagcagcatgggcatatcgca
ggcgtcggctttgagatgtatgtgaagctgctcgaggaggccgtggcgcgcaaaaagggc
gagaaacctgcgccgccgcccgtacagaccgtcatcgacctccccgtggaggcgtatctg
gatggcggctacatcgaggacgccatgcacaagatcgaggtctatcagaagatcgcggcg
gtgcagacggatgaggatctcgatgcactgctcgacgagctgatcgaccggttcggcgag
ccgacagcgcccgtccttgctctgctcgatatcgcgcgcatcaaaaatgcggcgcggacc
tttcatgcacggagcattgcgctgaaggaaaatgcgctcgatatcgccctgccggcggat
gaaaagctgccgctcccggcactcatgcgcctcgaccgcgcctttgggcggcgcgtcggg
cccctgcccgaggggagcggctatcgcatccgcctcgcggcacgtgaatgcaggaatgta
ttggatacggtgctggagattgtgcagttgatcacaggagagcggcatgaatga
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