Selenomonas sp. TAMA-11512: TAMA11512_06010
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Entry
TAMA11512_06010 CDS
T10655
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
selm Selenomonas sp. TAMA-11512
Brite
KEGG Orthology (KO) [BR:
selm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
selm03032
]
TAMA11512_06010 (topA)
03400 DNA repair and recombination proteins [BR:
selm03400
]
TAMA11512_06010 (topA)
Enzymes [BR:
selm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TAMA11512_06010 (topA)
DNA replication proteins [BR:
selm03032
]
Prokaryotic type
DNA Topoisomerases
TAMA11512_06010 (topA)
DNA repair and recombination proteins [BR:
selm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TAMA11512_06010 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BEU87137
LinkDB
All DBs
Position
639300..641753
Genome browser
AA seq
817 aa
AA seq
DB search
MPTAAVSPKKKNTNAEAEKTATKKAAAKKTAAKRASASKSKAVQKSLVIVESPAKAATIE
KYLGDKFMVRASMGHLRDLPKSQFGIDVEHDFAPKYINIRGKGDLIKALKKDASKAARVY
LASDPDREGEAIAWHLAHILGLDPETDCRIVFNEITKSAVLAAVKEPHPIDMDRVDAQQT
RRMLDRIVGYQLSPLLWRKVRKGLSAGRVQSVTVRLICDREKEIQAFHSEEYWTVGVKAK
KGKSLAFTAEVREVDGRKLALSNQKETDALVADFQKEQLIVADVKKGQRQRKPSAPFTTS
SMQQDAARKLGFTSRKTMMLAQQLYEGIDIGRKGRVGLITYMRTDSTRISNQALSETRAY
LSETFGADYVPSKPNFYAAGKKAQDAHEGIRPTSVANVPEAMEKYLTKDQWKLYSLIWQR
FVACQMANAVFDTVSAALKAGRYGCRASGSTLKFPGFLAVYTDTSKKEKDVRIPELTVGD
VLSVEKLLPEQHFTEPPPRYNEASLVKTLEEDEIGRPSTYAPIIETIIARGYVVRKEKQF
QPTELGFMVNDMLEEYFKDIVDVKFTADMERRLDDIADGKTRKDALLKDFYAPFEETLKQ
ADSAIEQVEAPVEVSDVVCEKCGRNMVVKLGRFGKFLACPGFPDCRNTKPILKETGAQCP
KCSKQIVERRSKRGRTFYGCESYPDCDYMTWDQPLKEPCKECGALMLAHRYRNGRVLPYC
SNEACRTRVDHPINREIEKQRAKEAKAAAADTASEMKPEKAAKTAAKKTAKTTSEKASKT
AAKKTSKTAAKKTAAKKTTKTTAKKTSVKRKPKGDKA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
ttgcctacagctgcagtgagtccaaagaagaaaaatacaaacgccgaagctgagaagacc
gcgacaaagaaggcggccgcgaaaaagacagcagcgaagcgcgcaagcgcatccaagtcg
aaggcggtgcaaaaatcgcttgtcattgtggagtctccggcaaaagccgcgaccatcgaa
aaatatctcggggataaattcatggtgcgcgcttccatggggcatctcagggatttgccc
aagagtcagtttggcatcgatgtggagcatgattttgcgcccaagtatatcaatattcgc
ggcaagggcgacctgatcaaggcgctcaagaaggacgcgagcaaggcagcacgtgtctat
ctcgcttccgatccggaccgcgagggcgaggcgattgcatggcatcttgcgcatatcctg
gggcttgatcccgagacggactgccgaatcgtcttcaatgagattacaaaatcggctgtc
ctggcagccgtcaaggaaccgcatcccatcgatatggatcgcgtggacgcgcagcagacg
cgccgcatgctcgaccgcatcgtcggctatcagctcagcccgctgctctggagaaaggtg
cgtaaggggctctcggcaggacgtgtccaatcggttacggtgcggctcatctgtgaccgc
gagaaggagatacaggcatttcactcggaggagtattggacggtcggcgtcaaggcaaag
aagggaaaatcccttgcctttacggctgaggtgcgtgaggttgacggcaggaagctcgct
ctttccaatcagaaggagaccgatgctctcgttgcggacttccagaaggagcagctgatc
gttgccgatgtcaagaaggggcagcggcagagaaagccgtcggcgccgtttacgacgagc
agcatgcagcaggatgccgcccgcaagctgggattcacctcgcggaagacgatgatgctt
gcccagcagctctatgagggaatcgacatcggccgcaaggggcgcgtcggtctgatcacg
tatatgcgtacggattcgacgcgcatttcgaaccaggcgctttccgagaccagagcgtat
ctctccgagacattcggcgcggactatgtgccgagcaagcccaacttttacgcggccggc
aagaaagcgcaggacgcccatgaaggcattcgcccgacgagcgtagccaatgtgccggag
gcgatggaaaagtacctgacgaaagatcagtggaagctctacagcttgatctggcagcgt
tttgtcgcctgccagatggcaaatgccgtctttgatacggtgagcgcagcgctgaaggcc
ggccgttacggatgccgtgcttcggggtcgacactcaaattccccgggttcctggctgtc
tatacggatacttcgaagaaggaaaaggatgtccgcataccggagcttacggtcggtgat
gtactgagcgtggaaaaactcctgccggagcagcacttcacggaaccgccgccgcgctac
aacgaagcatctctcgtcaagacgcttgaagaggatgagatcggccgtccgagcacgtac
gcgccgatcatcgagacaattatcgcgcgcggctacgtcgtgcgcaaggagaagcagttc
cagccgacggagctgggattcatggtcaacgacatgctcgaggaatatttcaaggacatc
gtcgatgtcaagtttacggccgatatggagcgccgtctcgatgatattgccgacgggaaa
acgcggaaggacgcgctcctgaaggacttctacgcgccgtttgaagagacgctcaagcaa
gccgactctgccatcgaacaggtggaggcgcccgtcgaggtatccgatgtcgtctgtgag
aaatgcggccgcaacatggtcgtgaagctcgggcgttttgggaaattcctggcgtgcccc
ggctttcccgactgccgcaatacgaagcccatcctgaaggagaccggggcgcagtgcccg
aagtgcagcaagcagatcgtcgagcgccgctcgaagcggggacgcacattctacggctgt
gagagctatccggactgtgactatatgacgtgggatcagccgctcaaggagccttgcaaa
gaatgcggcgcgctgatgcttgcgcatcgctaccgcaatgggcgcgtactgccctattgc
agcaatgaggcctgcaggacgcgcgtcgatcaccccatcaacagggaaatcgagaagcag
cgcgccaaggaagcaaaggccgcggcggcggatacggcttcggagatgaagccggagaag
gcggcgaagacggctgccaagaaaacggcgaagacgacatccgagaaggcgtcgaagacc
gccgcaaagaagacatcaaagactgcagcaaaaaagactgccgcgaagaaaacgacgaag
acgaccgctaagaagacatctgtcaagcgcaagccaaagggagataaggcatga
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