Selenomonas sp. TAMA-11512: TAMA11512_07740
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Entry
TAMA11512_07740 CDS
T10655
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
selm Selenomonas sp. TAMA-11512
Pathway
selm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
selm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TAMA11512_07740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
selm03019
]
TAMA11512_07740
03009 Ribosome biogenesis [BR:
selm03009
]
TAMA11512_07740
Enzymes [BR:
selm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TAMA11512_07740
Messenger RNA biogenesis [BR:
selm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TAMA11512_07740
Ribosome biogenesis [BR:
selm03009
]
Prokaryotic type
rRNA helicases
TAMA11512_07740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
T4SS-DNA_transf
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BEU87310
LinkDB
All DBs
Position
825220..826524
Genome browser
AA seq
434 aa
AA seq
DB search
MSDFKALGMPGEVVEALRRQGIREATPVQEKAIPVLRGGKDAIVQAPTGTGKTLAFLLPL
MLRMKKDIPVVQTIVVSPTRELAIQTAKVAKSLEDATGIRSVLVYGGADILRQKEKLART
PQLIIATPGRILDHMRHHSVDLTKVNKVVLDEADELMRLGFIEDVEMLLDTVAPDRQFLL
FSATMPDRIRSLARRYMRAPEEIHITDGEVTLDNIEERVVHVREEDKLDRLSELINNEQP
YLAMIFVHTKEKASYLSFELSKRGYLVDALHGNLTQTQRNFVMRQFREAKLQLLVVTDIA
ARGLDIEGVTHVFNYDLPQDAEWYIHRIGRTGRAGEKGIAITFVTRRQEEKLRRIEGVIK
STLAVQPGLRRKKKPLSEKSGADAKQSVKKAAPARQKSKGEKGKDRARKIAKRRTAKTAA
PKAKKSRGRSKYRV
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgatttcaaagctctggggatgcccggggaagtcgtcgaggcacttcgccggcag
ggcatccgggaagcgacgcccgtacaggaaaaggccatccccgtccttcgaggcggcaaa
gatgccattgtgcaggcgccgacagggacaggcaagacgcttgccttcctgctgccgctg
atgctgcgcatgaagaaagacattcccgttgtgcagacgatcgtcgtaagtccgacgcgg
gagctcgccatccagacggcgaaggtcgcgaaatcccttgaggacgcgacgggcatacgc
tctgtcctcgtctacggcggcgccgatatcctgcggcaaaaggaaaagctcgcgcgcacg
ccgcagctcatcatcgccacaccgggacgcatcctcgaccacatgcgccatcactccgtg
gatctgacaaaggtcaataaggtcgttctcgatgaggcggatgagctaatgcgactgggc
tttattgaggatgtcgagatgcttttggataccgtcgccccggatcggcagttcctgctg
ttttcggctaccatgccggaccgcattcgatcgcttgcgcgccgctatatgagggcaccg
gaagagattcacatcaccgacggcgaagtcacgctggataatatcgaagagcgcgtcgtc
catgttcgggaagaggacaagctcgatcggctctccgagctcatcaacaatgagcagccg
tatctcgccatgatcttcgtccacacgaaggaaaaggcgtcatatctgtcctttgagctg
tcgaagcgcggctatctcgtcgacgcgcttcacggaaatctgacacagacgcagcggaac
tttgtcatgagacagttccgcgaggcgaagctgcagctcctcgtcgtcaccgatatcgcc
gcccgcgggctcgatatcgagggggtgacgcacgtcttcaactacgatttgccgcaggac
gccgagtggtacatccatcgcatcggcaggacaggccgcgccggggagaaggggattgcc
atcacgttcgtcacgcggaggcaggaggaaaagctccgccggattgagggcgtgatcaag
agcacgcttgccgtgcagccgggccttcgcaggaagaaaaagcccttgtcggaaaagagc
ggggcggatgcaaagcagtccgtgaagaaggccgcgcccgcgcgacagaaatccaaaggc
gaaaagggcaaggacagagccaggaagatcgctaagcgccgcacggcgaagacggccgcg
ccaaaagcgaaaaagagcaggggccgctccaagtatcgcgtatag
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