Selenomonas sp. TAMA-11512: TAMA11512_14190
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Entry
TAMA11512_14190 CDS
T10655
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
selm Selenomonas sp. TAMA-11512
Pathway
selm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
selm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TAMA11512_14190 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
selm03400
]
TAMA11512_14190 (mfd)
Enzymes [BR:
selm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TAMA11512_14190 (mfd)
DNA repair and recombination proteins [BR:
selm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TAMA11512_14190 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SecA_DEAD
UB2H
AAA_22
AAA_30
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BEU87955
LinkDB
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Position
complement(1496032..1499346)
Genome browser
AA seq
1104 aa
AA seq
DB search
MKELFDVMRQDASVQNIYDIYRKKNRDSFIYGLSGSQKAAVFAGAFAEDHRPLIIVTHSR
ELLSNWKEDIHTLLPNIKVREYPELDMLSVKATAKSIERQAARMEVLAALAQQEHMVVLA
TPAAVMQHGLSKQAFERFSISVSIGENLGRNPFLKQLAGLGYEAAPEVEGRGQFAARGGI
IDVFPIQEEQPIRIEFFDDEVDSIRRFDLETRRSLHAMERVMILPLAESGAAGMSDTLFS
HMDKEGVVLFDEPMRIREQILTMRKENPDFKGRSFSWEELLSSAKGNTVLYAALMLQKIH
EAEPKELVSVSVQAVAPYQKQLELLREDVARYLTENRIVLILLGDTEKVIRFRELLAKDR
IASLVKEVDEPLSKRHINVRKGTLLNGFELPSANLVVITEKDIFGRQKKRTAVKAAKGDR
IAHFREIREGDHVVHVNHGIGKYMGVETLDVGGIKRDYLHIKYGGDDKLFLPTDQVGFLQ
KYIGSEGVAPRLHKMGGAEWGKAKARAKASVEDIADELIDLYAKRREEKGFAFTEDSTWQ
REFEDAFPYQETSDQLTAIEEIKQDMERPRPMDRLLCGDVGFGKTEVAIRAAYKAVLDHK
QVAVLVPTTVLAQQHFQTFSSRFQEFGVEVDVISRFRTAKEQRSTIIRTEAGKVDVLIGT
HAILNQKRIQFKNLGLLIVDEEQRFGVKQKEKIKQFATGVDVLTLSATPIPRTLHMSLVG
ARDMSIIETPPAERFPVQTYVMENNDAQIASAIRREMRRGGQVYFIYNRVDTIDRMRVRL
ENLVPEASIQTAHGQMPEELLERVMMDFYEGQYDILLATSIIENGLDVSNANTIIVYNAD
YFGLSQLYQMRGRVGRSNHMAFAYFVYQKDKVLSETAEKRLQALKEFAELGAGFKIAMRD
LEIRGAGNLLGAEQHGHVASVGFEMYTKLLDEAITERKTGEKKAPEPPEPVVDMNVEAYI
DADYIDDAMHKIEVYQRIAAIREPNEVKELLDELLDRFGDPTPPVMRLLEIARIRAYARR
LGIRAIVEKPQFVELSFIEPVQIKPENILKCMELFGRGAKMLPPPTSLLRIRLASQYKKN
ITNFVTRLLLLLSGNANAFAQKAG
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagctgtttgacgtaatgaggcaggatgcctctgtccaaaatatttacgatata
tatcggaaaaaaaatagagatagttttatctatggcttatcaggatcacaaaaggccgcc
gtttttgcaggggcctttgcggaagatcatcgaccgttgattattgtgacacacagtaga
gagcttctttctaactggaaagaagatatccatacgctgctcccgaacatcaaggtgcga
gagtatcctgaacttgatatgctcagcgttaaagcaacggcgaaaagcatagaaagacaa
gccgcccgaatggaggtgctggctgcactcgcgcagcaggaacatatggttgtacttgct
acacctgctgctgtcatgcagcacggattatcaaagcaggcatttgaacggttcagcatt
tctgtttcgattggtgaaaatcttggccgcaatccttttttgaagcaattggccggtctg
ggctatgaggctgcgccggaagtcgaagggcgtggccaatttgcggcgcgcggcggaatc
attgatgtttttccaattcaggaggagcaaccgattcggatcgagttttttgatgatgaa
gtggactccattcggcgctttgatttagaaacacggcgatcgctgcacgctatggaacgg
gttatgattctcccgttggcggaatccggtgcggcgggcatgtcggatacgctcttttcc
catatggacaaagagggcgttgtactctttgatgaacccatgcgtattcgcgaacaaatt
ttgacgatgcggaaagaaaatccggattttaagggaagaagcttttcttgggaagagctg
ctgtcatctgcgaagggaaatacggttctctatgctgcgttgatgctgcaaaaaatacat
gaagcagagcctaaagaattggtcagtgtctctgttcaagcggtagccccttatcaaaaa
cagctggaactcttgcgtgaggatgtcgctcgttacctgacagaaaatagaatcgtgctt
attcttcttggtgatacggaaaaggtaatccgctttcgtgagcttttagcaaaagatcgc
attgcgtctcttgttaaagaggtagacgaacctctatcgaaacgacacattaatgtccga
aaagggactttgctgaacggatttgaattgccttctgcaaatcttgtcgttataacggaa
aaggatatatttggccgtcagaaaaagagaacagcggttaaagctgccaagggagaccgc
attgctcatttcagagagatacgtgaaggagaccatgtcgtccatgtcaaccatggtatc
ggtaagtatatgggcgtcgaaacacttgatgtaggcgggataaaaagagattatctgcat
atcaaatacggaggcgatgataagctttttcttccaacggatcaagtcggatttttacag
aagtacatcggctctgaaggcgtcgcgcctcggctgcataagatgggcggtgccgagtgg
ggcaaggcgaaggctcgggcaaaggcgtcggtggaggatattgcagatgaacttattgat
ctctacgcaaaaagacgtgaagagaaaggctttgcattcacagaggattctacttggcag
agggagtttgaagatgcctttccatatcaggagacatcggatcagcttacggcgattgag
gaaatcaagcaggatatggagcgtccgcgacctatggaccgacttctctgtggagatgtc
ggcttcggaaagacggaagttgccattcgagctgcatacaaggcggttttggaccataaa
caggtggcggtactcgtccccacaaccgtattggcgcaacagcattttcaaaccttcagc
agtcgttttcaggaattcggagtggaagtcgatgtaataagccgctttcgtaccgccaag
gagcaacgctcgactatcattcgtacagaagcgggtaaggtggacgttctcattgggacg
catgccattttaaatcagaaacgcatacaattcaaaaacttaggcctgctgatcgttgat
gaggaacagcgcttcggtgtcaaacagaaggaaaagattaagcaatttgcaacaggcgta
gatgttctaacactctctgcaacgcccataccaagaactctccatatgtcgttggtagga
gctcgtgatatgagtatcattgaaacgccgcccgcagagagatttccggtgcagacttat
gttatggaaaacaatgatgcacagattgcctctgccatacgcagagagatgagacgcggc
ggacaggtatactttatatacaatcgcgttgatacaattgatcgcatgcgtgttcgtttg
gagaatcttgtccccgaagcctctatacagacggcacacggacaaatgccggaagagctt
ctcgaaagagtcatgatggatttttatgaaggtcaatatgatatcctgctcgcgacgagc
atcattgaaaatgggttggatgtttcaaacgcgaatacgattattgtctacaatgccgat
tactttgggctttcacaactctaccagatgcgcggtcgagtaggacgatccaatcatatg
gcgtttgcttattttgtctaccaaaaggataaggtgctttccgagacggctgaaaagcga
ttacaggcgttgaaagaatttgccgaactgggggccggttttaaaattgccatgcgcgac
ttggaaatccgaggagcaggcaatctgcttggtgcagagcagcatggacacgttgcaagt
gtgggctttgagatgtatacaaagcttttggatgaagctataacggagcgaaagacggga
gaaaagaaagcaccggagcctccggaaccggttgtggatatgaacgttgaagcctatatt
gatgccgattatattgatgatgccatgcataagattgaggtatatcagcgcatagctgcc
attcgtgagccgaatgaagtgaaggaactcttagatgagctcttagatcgatttggggat
cctacaccacctgtaatgcgcttgctggaaatagcccgtattcgagcatatgcgcgtcgc
ttaggcatacgagcgattgtagagaaaccgcaatttgtagaactgtcgttcattgaaccc
gtgcaaataaagccggagaacatattgaagtgcatggagctctttggacgaggagctaag
atgctgccgccgccgacatccttgcttcgtatacgattggcatcacagtataagaaaaat
ataacgaactttgtgacaaggctgctgctgctgctgtccggaaatgcgaacgcctttgct
caaaaggcgggttaa
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