Selenomonas sp. TAMA-11512: TAMA11512_14550
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Entry
TAMA11512_14550 CDS
T10655
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
selm Selenomonas sp. TAMA-11512
Pathway
selm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
selm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TAMA11512_14550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
selm03019
]
TAMA11512_14550
03009 Ribosome biogenesis [BR:
selm03009
]
TAMA11512_14550
Enzymes [BR:
selm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TAMA11512_14550
Messenger RNA biogenesis [BR:
selm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TAMA11512_14550
Ribosome biogenesis [BR:
selm03009
]
Prokaryotic type
rRNA helicases
TAMA11512_14550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BEU87991
LinkDB
All DBs
Position
complement(1544043..1545629)
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AA seq
528 aa
AA seq
DB search
MKKDIQSFGSIALSKKLLAAVNDMGFEEPSPIQAQTIPLVLEGHDVIGQAQTGTGKTAAF
GIPTIELLPEGKPRLTALVLTPTRELAIQTAEELNKIGRHKRVRTLPIYGGQAIDRQIRA
LKNGVHIVVGTPGRLIDHIHRGTIQLAHVRTLVLDEADEMLDMGFIDDIEEILSNIRTED
RQTLLFSATMPAPIEKLAARYMKHPKKVAISRENLTVPLITQVYYETREKFESLCRVLDV
EETGKLIIFCRTKRGVDDLTASLQSRGYLAGGLHGDLSQSQRDRVMKKFREGRMDTLIAT
DVAARGIDIDDITHVINYDIPQDHESYVHRIGRTGRAGRKGVAMTFIEPREYRQLRTIEK
LAKTKIVRRPLPSATELLERQKELIKERLGKVLQQNKYAEYHAIVSDISIEGDYNYADVA
AAALKLALEGVNGPSGDARFADTGGAPGMVRLFLNVGRAQKIRPQDIVSAFSSEADIPGD
VIGVINIYEKFTFVEVPEDLAERVLSVMHRNTMKGYKVNVEPAKKKDE
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaagatatacagtctttcggctcgattgcattgagcaaaaagcttttggcagca
gttaatgacatggggtttgaagagccttcgccaatacaggcgcagacaattccgcttgtt
ttggaagggcatgatgtcatcggacaggcacagaccggcacagggaagacagccgcgttc
ggcatcccgaccatcgagctcctgccggaaggaaagcctcgtctcacggcgcttgttctg
acgccgacacgtgagctcgccatacagacggcagaagagctgaataaaatcggtcgtcat
aaaagagtgcggacactgccgatctacggcggtcaggcaattgacaggcaaatacgcgcg
cttaagaacggcgtgcacattgttgtcggtacgccgggacgtctgatcgaccatattcat
cgaggaacgattcagcttgcccatgtcaggacgcttgttttggatgaagcggatgagatg
ctcgatatggggttcatcgatgatatcgaggagatcctgtccaatattcgtacagaggat
cgacagacgctgctcttttccgcgacgatgccggcgccgattgagaagctggcggctcgc
tatatgaagcatccgaagaaggtggctatcagtcgagaaaatctcacggttccattgatt
acgcaggtctattatgagacgcgtgagaaatttgaatccctttgccgtgtcttggatgta
gaagaaacagggaaactcatcattttttgccgtacaaagcgcggcgtagacgatcttacg
gcatcactgcagtcaagaggatatcttgccggagggctgcatggagacctcagtcaatca
cagcgtgaccgtgtgatgaagaagttccgtgagggcaggatggacacactgattgccacg
gatgttgcggcgcggggcattgatatcgacgatattacgcacgttatcaactatgacatt
ccgcaagatcatgaatcctatgtgcatcgtatcggccgtaccggccgcgccggacgaaaa
ggcgttgcgatgacctttattgagccgcgtgaatatcggcagctgcgtacgattgagaag
cttgccaagacgaagatcgtccgtcgtccattgccgtcggcaacggagctcttagagcga
cagaaggagctcatcaaggaacggcttggcaaggtgctgcagcaaaacaagtacgccgaa
tatcatgcaattgtatccgatatttccatagaaggtgattataactatgcggatgttgcc
gcggcagccttgaagctcgcgctcgaaggagtgaacggaccgagcggggatgcacgcttt
gccgatacaggcggcgcaccgggcatggtacgattattcttaaatgtcggcagagcgcag
aagattcgaccgcaggacatcgtcagcgcgttttccagtgaggcggatataccgggcgat
gttatcggggtcatcaatatatatgagaaattcacgttcgttgaggtgcctgaggatctt
gcagaacgcgtgttatcggtcatgcaccgcaacacgatgaagggctataaggtaaatgtt
gagcctgcaaagaaaaaggatgaatag
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