Selenomonas sp. TAMA-11512: TAMA11512_15040
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Entry
TAMA11512_15040 CDS
T10655
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
selm Selenomonas sp. TAMA-11512
Pathway
selm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
selm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TAMA11512_15040 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
selm03019
]
TAMA11512_15040 (rny)
Messenger RNA biogenesis [BR:
selm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TAMA11512_15040 (rny)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
ApoO
Motif
Other DBs
NCBI-ProteinID:
BEU88040
LinkDB
All DBs
Position
complement(1601467..1602939)
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AA seq
490 aa
AA seq
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MRKRTAEAAIGAAEEEAKKIVSAAEAKGEAKKKEALLEAKEDIHRLRQELDRDTKDRRNE
LSRQERRIVQKEENLDKKLDALEKKEESLIAKEAGIERSQAAIDALHEQEKKELERISGL
SSEEARGLLMAEAEEEIKHEKALMIKEYEQQAKDEADKKAREIVSLAIQRCSADAVAETT
VSVVALPNDEMKGRIIGREGRNIRTLETLTGIDFIIDDTPEAVILSGFDPVRREVARIAL
EKLIQDGRIHPARIEEMVEKAKREVDQRIKEAGEQATFDTDVHGLHPELIRLLGRLRYRT
SYGQNVLNHSIEVSHLAGVMAAELGVDVMLAKRGGLLHDIGKAVDHEVEGSHVTIGMDLA
KKYRESKEVINAIASHHGDYEATTVESVLVAASDAVSAARPGARRESLETYLKRLRRLEE
LAESFEGVESCFAIQAGREVRVMVKPDKVDDIASVALAHDLVKKIEKELEYPGQIKATVI
RETRVVEFAK
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaagcgtacggcggaagcagccatcggagccgcggaggaagaagcgaaaaaaatc
gtgtctgccgcggaggcaaagggtgaagcgaagaaaaaggaagccttgctggaagcaaag
gaggacatacaccgtctccgtcaggagcttgatcgggatacaaaggatcgccgcaatgag
ctctcaagacaggaaaggcgcattgtccaaaaagaagaaaaccttgacaagaaactcgac
gccttggagaagaaggaagaatccctcatcgctaaggaggctggcatcgagcgctcacag
gcagcgattgatgcgttacatgagcaggagaaaaaagagctggagcgcatttccggtctc
tcaagtgaggaggccagaggtcttcttatggcggaagccgaagaggagatcaagcatgag
aaagctctgatgatcaaggagtatgagcagcaggcaaaggatgaggccgataaaaaggcg
agagagattgtctcgctagccatccagcgctgctctgccgacgccgttgcggagacgacg
gtttctgtcgtagcactgccaaatgatgagatgaaaggccgcatcatcggccgtgaagga
cgcaatattaggacactggaaactttgacggggatcgactttatcattgatgatacgccg
gaggcggtcatcctatctggctttgacccggtacgacgcgaagtggctcgcatcgcgctg
gagaagctgatacaggatggtcgcattcatcctgcgcgcatcgaagagatggtcgagaag
gcaaagcgtgaagtagaccagcgaatcaaagaagccggtgagcaggcaacattcgacacc
gatgtgcatggtctgcatccggagctcataagacttctcggtcgacttcgctatcgtaca
agctatgggcaaaatgttctcaatcactcgatcgaggtttcgcacctcgccggtgtgatg
gctgctgaattgggcgtggatgtcatgcttgcaaagagaggcggccttctgcatgatatt
ggcaaggctgtcgatcatgaggttgagggatcgcacgttaccatcggcatggatttggcg
aagaaatatcgcgaatctaaggaagtgatcaatgcgattgcttctcatcacggggattat
gaggccacaacggtcgagtccgtgcttgtcgcagcttccgatgcagtgtcggcagcgcgt
cccggtgcgcgtcgcgagagtctcgaaacgtatttaaagcgtcttcgacgcttggaggag
ctcgctgagtcctttgagggtgtggagagctgctttgccattcaggcggggcgagaggtg
cgcgtcatggtcaagccggataaggtggacgatatcgcatcggtggctcttgcgcacgat
cttgttaagaagattgaaaaggaacttgaatatccggggcagattaaggccacggtcatt
cgtgagacacgtgttgttgagtttgcaaagtaa
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