Selenomonas sp. TAMA-11512: TAMA11512_17500
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Entry
TAMA11512_17500 CDS
T10655
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
selm Selenomonas sp. TAMA-11512
Pathway
selm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
selm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TAMA11512_17500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
selm03021
]
TAMA11512_17500 (rpoC)
03400 DNA repair and recombination proteins [BR:
selm03400
]
TAMA11512_17500 (rpoC)
Enzymes [BR:
selm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TAMA11512_17500 (rpoC)
Transcription machinery [BR:
selm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TAMA11512_17500 (rpoC)
DNA repair and recombination proteins [BR:
selm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TAMA11512_17500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LptE
Motif
Other DBs
NCBI-ProteinID:
BEU88286
LinkDB
All DBs
Position
complement(1837857..1841843)
Genome browser
AA seq
1328 aa
AA seq
DB search
MLDVNNFDSMRIGLASPEKIRDWSYGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRIRYKGIVCDRCGVEVTRAKVRRDRMGHIELAAPVSHIWYFKGIPSRMGLILDV
SPRSLEKVLYFASYIVLDPADTPLMKKQLLTETEYRENRAKYGDEFRVGMGAEAVKELLD
ELDLEEMNEKLRKELREVSGQRKVRAIRRLEVVEAFRKSGNNPSWMIMDVVPVITPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVASEAAHNIKSAKRMVERARPEVWDMLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLTEGRALKLHPLACTAYNADFDGDQMAIHLPLSAEAQAEARILMLAANHIL
APKDGRPIIVPSQDMILGAYYLTILRPGARGEGKVVTGINEALLAYQHGELHLQAPIKAY
IEGYGIVNTSLGRMIFNEILPPEIRSYSKDENGEWCLGELMKKKALGKLVADCFHHFGAA
KTAVVIDDVKNLGYHYACLAGMTVAISDIIVPEEKANILHETEGKVNHIDRLFGRGLITD
EERYNKVCALWDQATKDVTKAMMNNMDAFNPIKMMADSGARGNEQQMRQLAGMRGLMADP
SGKIIDLPIKANFREGLTVSDYFISSHGARKGLADTALRTADSGYLTRRLVDVAQDVIVR
EDDCDVVGINLARERARLATSAAAAVAILKDALVGRITASDILAPETDELLIPKDTALTA
EDLDLIGEEGVGEVSLRGAGFSSEAVLSNAMMTEVISLGEPEEKAREAIHHAMIHEMLGK
KTADAVVDEDGVEILAADSELTEELIDRILDSTAHEVKVRNNNVRGIEVEAIMEGSSVSV
SLEDRITGRVLAEDIIDSETGEVVAHLNEMIDEALAAKIAKVRKKVSIRSVLTCKSQFGV
CIKCYGRDLANQSQVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEE
LFEARKPKHNAIIAEIEGEASVQDGKGMRYVTITPMTGEAREYAIPYGSRLVAVDGMHLK
PGDKLTEGSINPHDILRVCGLRDTQRYLVYEVKKVYQSQGVDINDKHIEVMVRQMLHKVK
IEESGDTGFLPGEYIDINSFETANAEAIEANGMPAVAKPILLGITKASLATDSFLSAASF
QETTRVLTDAAIKGKVDPLIGLKENVIIGKLIPAGTGMSRYRNISVVDPNPPAQELPEED
VKGENVSA
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgtaaacaactttgattcgatgcggatcggccttgcttcgccagagaagatt
cgtgactggtcgtacggtgaggtcaagaagccggagacgatcaactatcgcaccttgaag
ccggagcgcgacggtctgttctgcgagcgtattttcggacctacgcgcgactgggaatgc
cattgcggcaagtacaagcgcatccgctataagggcatcgtctgcgaccgctgcggtgtc
gaggtcacgcgcgcgaaggttcgccgcgatcgcatgggacacatcgagctcgccgctccc
gtctcccatatttggtatttcaagggcatcccaagccgtatggggctcatcttggacgtc
agcccccgctctttagaaaaggtgctctatttcgcttcctacatcgtgctcgatccggcg
gacacgccgctgatgaagaaacagctcctgacggagaccgagtatcgtgaaaatcgcgcc
aagtacggcgatgaatttcgtgtcggcatgggcgccgaggcggtcaaagagctgctggat
gagctcgatctcgaggagatgaacgagaagctccgcaaggagctgcgcgaggtctccgga
cagcgcaaggtgcgcgcgattcgccgtctcgaagtcgtcgaggcgttccgcaagtccggc
aacaatccctcgtggatgatcatggacgtcgttcccgtcattactcccgagctgcgcccg
atggtgcagctggacggcggccgcttcgcgacaagcgatctcaacgatctctatcgccgt
gtcatcaaccgcaacaatcgtctcaagcgtctgctcgatctcggcgcgccggatatcatc
gtccgcaatgagaagcgcatgctccaggaggcggtcgatgcgctcatcgacaacggccgc
cggggccgtccggttaccggccccggcaatcgtccgttgaagtcgctctcggatatgctc
aagggcaagcagggccgcttccgtcagaacctcctcggcaagcgcgtggactactcgggg
cgttccgttatcgtcgtcggtcctgagctcaagctgcatcagtgcggtctgccgaaggaa
atggcgctcgagctcttcaagccctttgtcatgaagaagctcgtcgcttccgaggccgca
cacaacatcaagagtgcaaagcgcatggtcgagcgtgcccgtccggaagtctgggatatg
ctcgaagaggtcatcaaagagcatccggtcttactgaatcgcgccccgacgcttcatcga
ctcggcattcaggcgtttgagcctgtcctcacggaaggacgcgccttgaagcttcatccg
ctcgcctgcacggcctacaacgcggattttgacggagatcagatggctatccatctgcct
ctgtcggcggaggcacaggcagaagcccgtatcctcatgcttgccgcgaaccatattctc
gcgccgaaggacggccgcccgatcatcgtgccgtcacaggatatgattctgggcgcttac
tatctcacgattctgcggccgggcgcgcgcggtgagggcaaggtcgtcacgggcatcaac
gaggcgctcctggcttaccagcatggagagcttcatctgcaggcgccgattaaggcctat
attgagggctacggcatcgtcaatacatccctcggacgcatgatcttcaacgagatcctg
ccgccggagattcgctcctactcgaaggacgagaacggcgagtggtgcctcggcgaactc
atgaagaagaaggcgctcggcaagcttgtcgccgattgcttccatcacttcggcgcggca
aagacagccgttgtcatagacgatgtcaagaacctcggctaccattatgcctgcctggcg
ggcatgacggttgccatttccgatatcatcgttcccgaggaaaaagcgaatatcctgcac
gagacggagggcaaggtcaaccatattgacaggctcttcggccgcggactcatcacggat
gaagagcgctacaataaggtttgcgctctctgggatcaggcgacgaaggatgtcacgaag
gccatgatgaacaacatggatgccttcaacccgatcaagatgatggcggattccggcgct
cgaggcaacgagcagcagatgcgtcagcttgccggtatgcgcggactcatggcggatccg
tccggcaagatcattgatttgccgatcaaggcgaacttccgtgaaggactgacggtttcc
gactacttcatctcctcgcacggcgcccgcaagggccttgccgatacggctctccgtacg
gcggactcgggatatctcacacgccgtctcgtcgacgttgcgcaggatgtcatcgttcgc
gaggacgactgcgacgttgtcggcatcaaccttgcacgcgaacgggcacgcctcgcgact
tcggctgccgccgccgtcgccatcctcaaggatgcgctcgtcgggcgcattaccgcgtcg
gatatcctcgcgccggaaacagatgagctcctcattccgaaggatacggctctcacggca
gaggatcttgatctcatcggtgaagagggcgtcggcgaagtctcgcttcgcggtgcgggc
ttctcctccgaggcggttctgtccaatgcgatgatgaccgaggtcatctcgctcggcgag
cccgaagagaaggctcgtgaagccatccaccatgcaatgatccacgaaatgctcggcaag
aagacggcggatgccgttgtcgatgaagacggcgtcgagattctcgctgcggacagcgag
ctcacggaggagctcatcgaccgcattctcgacagcacggcgcatgaagtcaaggtgcgc
aacaacaacgtgcgcggcatcgaggtcgaggcgatcatggaaggctccagtgtcagcgta
tcgctggaagaccgcatcacgggccgcgtgctcgcggaagacatcatcgattccgagacg
ggtgaagtcgtcgcgcatctcaacgagatgatcgatgaagcgcttgccgcgaagattgcg
aaggtgcgtaaaaaagtctccattcgcagcgtcctcacctgcaaatcgcagttcggcgtc
tgcatcaagtgctacggccgcgaccttgcgaatcagtcgcaggtcgatgtcggcgaagcc
gtcggcatcattgccgcgcagtccatcggcgagccgggtacacagctcacgatgcgtacg
ttccacacgggcggcgtcgccggtgacgatatcacgcagggtcttccccgcgttgaagaa
ctctttgaggcgcgcaagccgaagcacaatgccatcatcgcggagattgagggcgaagcg
tccgtacaggacggcaaaggcatgcgctatgtcacgattacaccaatgacaggcgaggct
cgtgagtatgcgattccgtacggatcgcgactcgttgccgtggacggcatgcacctgaag
ccgggcgacaagctcacggaaggctccatcaacccgcacgatatccttcgcgtctgcggc
ctccgcgatacgcagcgctatctcgtctacgaggtgaagaaggtgtatcagtcgcagggt
gttgatatcaacgataagcacatcgaggtcatggttcgtcagatgcttcacaaggttaag
attgaggagtccggtgacaccggcttccttccgggtgaatacatcgacatcaactccttc
gagactgccaatgccgaggcgattgaggcgaacggcatgccggccgtggcaaagccgatt
cttctcggcatcaccaaggcgtcgctggcaacggattccttcctctccgccgcttccttc
caggagacgacacgtgtactgacagacgcggccatcaagggcaaggtcgatccgctcatc
ggactcaaggagaacgtcatcatcggcaagctcattccggcaggtacgggtatgagccgc
tatcgcaacatttccgttgtcgatccgaacccgccggcacaggaactgccggaagaagat
gtcaagggagagaacgtctccgcatag
DBGET
integrated database retrieval system
