Selenomonas sp. oral taxon 920: BCS37_04130
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Entry
BCS37_04130 CDS
T04818
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
selt
Selenomonas sp. oral taxon 920
Pathway
selt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
selt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCS37_04130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
selt03400
]
BCS37_04130
Enzymes [BR:
selt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCS37_04130
DNA repair and recombination proteins [BR:
selt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCS37_04130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Cucumo_coat
UB2H
MFD_D3
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AOH47680
UniProt:
A0A1B3X377
LinkDB
All DBs
Position
893296..896580
Genome browser
AA seq
1094 aa
AA seq
DB search
MNVLFSILRADRSVRALSETLDAAPQQILAHGFSGSMKHAAAAAAYDANPRPLAIVTSGR
EALRAWQEDLAALLPEADVYELPELDRMDFAAHGAAKGLERSAQRMNILARLLRCEPIIV
LADIGAAAQRGLSTAEFSRAALSLRLGESLPREYLLERLSTLGYEHAAEVEHVGQFSVRG
GIVDIFPINALSPIRVEFFDAEIDSMREYDPLTKRSIKNISTASVMPLRAADDEGEACFL
TYLSGEGVTIFDEPLRLIAALADAEQEDEVRAARLFSWEELVAAGAAGHEIFASLMSRTV
PACTPAALISFQMVPMTAFQRQFALLESELRRYLADGVQVLILAGGVERANAVRDMLTGW
KIPAVLLRREGEEHREAVAVASGALRAGFELSAAHIAVLTEQDIFGRHKVKLRRTASAGE
RIRHFREIAPGDYVVHVSHGIGKYLGVETLEVAGIHRDYLRIQYGGDDKLFVPTDQVGLL
QKYIGSEGAAPRLHRMGTADWARARAKAQKSVEDIADHLLEIYAQRQLAHGHAFTPDDAM
QREFEEAFPYEETADQLRAVTEIKRDMESDKPMDRLLCGDVGFGKTEIAVRAAFKAAMDG
FQVAVLVPTTVLAQQHYQTFAARFAEFAPKVDVVCRFRSLREQAATLRDVVRGRVDILIG
THAILNRRRVRFQNLGLLIVDEEQRFGVTQKERIKEFASGVDVLTLSATPIPRTLHMSLA
GARDMSIIETPPADRLPVQSYVVESSDATIRGAIERELARGGQVYFIYNRVESIDRMREH
LLRLVPEARIASAHGQMNEDILEQVMMDFYEGHYDILLATSIIENGIDVANANTIIIYDA
DRFGLSQLYQMRGRVGRSAKMAFAYFTYRRDKVLSETAEKRLQAMKEFAQLGSGFKIAMR
DLEIRGAGSLLGAQQHGHIAGVGFEMYVKLLEEAVARKKGEAPAPPPVETVIDLPVEAYL
DGGYIDDAMHKIEIYQKIAAVRTNEDLDALLDELIDRFGEPTAPVLALLDIARIKNYARR
FGARSITAKGDVLDLALPEGEKLSFPALMRLDRGFGRRIGSLPEGDGYRIRLQPKESREI
LDTVLEIVRMASGE
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtgctcttttccatactgcgtgcggatcgttccgtgcgtgcgctctcagaaacg
ctcgatgctgcgcctcagcagattcttgcacacggcttttccggctctatgaagcacgcc
gctgctgctgccgcctatgatgccaacccacgtccgctcgccatcgtgacgagtgggcgc
gaggcgttgcgcgcgtggcaggaagatctggcggcactgctgccggaggcggatgtctat
gagctgccggaactggaccgcatggactttgccgcgcatggtgcggcgaaggggctggaa
cgctcagcacagcgcatgaatatcctcgcacgactgctgcgctgcgaaccgattatcgtg
ctcgcggacatcggggcggcggcacagagaggattgagtacggcagagttttcacgagca
gcgctctctctgcggctcggggagagtcttccgcgcgagtacctgctcgaacggctgagt
acactcggctacgagcacgcggcagaggtggagcacgtcggtcagtttagtgtacgcggc
ggcatcgtcgacatctttccgatcaatgcgctctcaccgatccgcgtggaattcttcgac
gcggagatcgactccatgcgtgagtacgatcctctgacgaaacgttccatcaagaatatc
agcacggcttccgtcatgccgctgcgtgcagcggatgatgagggggaggcgtgctttttg
acgtatctcagcggcgagggcgtgaccatcttcgacgagccgctgcgtctcatcgcggca
cttgcggatgcggagcaggaggatgaggtgcgcgcagcgcgtctgttctcatgggaggag
ttggttgccgcaggagcagcagggcatgaaatctttgcctcgctgatgagccgaaccgtc
cccgcatgtacgcctgcagcgctcatcagctttcagatggtgcctatgacagcgttccag
cggcagtttgcactgcttgagagcgagctgcgccgctatcttgcggatggggttcaggtg
ctcatcctcgcgggcggtgtagagcgggcgaatgccgtgcgcgatatgctgacggggtgg
aagatacccgccgttctcctgcgcagggagggtgaggagcacagggaagccgttgcggtt
gcatcgggggctctgcgtgcgggcttcgaactgagtgcggcgcacattgccgtgctcaca
gagcaggacatctttgggcggcataaggtgaaactgcggcgcacggcgtcggcaggtgaa
cgcatacggcactttcgcgagattgcccccggtgactatgtcgtgcatgtctcgcacggc
atcgggaaatatctcggcgtggagacgctcgaggtcgcgggcattcaccgcgactatctg
cgcatccaatacggcggagacgacaagctgttcgtaccgacggatcaggtcggcctactg
caaaagtacattggctcggagggggctgcgccgcgcctgcaccgcatggggacggcggat
tgggcacgtgcgcgcgcgaaggcgcagaaatccgtggaggatatcgccgatcatctgctc
gagatctatgcacagcgacagcttgcacacggacatgccttcacgcccgacgatgcgatg
cagcgggagtttgaggaggcgtttccgtatgaggagacggcagatcagctgcgtgccgtc
acggagatcaaacgcgacatggagagtgacaagcccatggaccgtctgctctgcggcgat
gtcggcttcggcaagacggagatcgccgtgcgcgcggcattcaaagcggcaatggatggc
tttcaagtagctgtgcttgtgccgacaacggtgcttgcgcagcagcattaccagaccttt
gccgcacgatttgcagagtttgcgccgaaggtggacgtggtctgccgcttccgctcgctg
cgcgagcaggcggcgacgctgcgcgatgtggtacgcggacgcgtggacatcctcatcggg
acacatgcgatcctcaaccggaggcgcgtgcgctttcagaacctcggactcctgattgtg
gacgaggaacagcggtttggggttacgcagaaggagaggatcaaggaattcgcgtcgggg
gttgatgtgctgaccctctcagcgacaccgattccgcgcacgctgcatatgtcgcttgcg
ggggcgcgtgacatgagcatcattgagacaccgcctgccgaccgcctgcctgtacagtcc
tatgttgtggagagcagcgatgcgacgatccgcggtgcgatcgagcgtgaactggcgcgc
gggggacaggtctactttatctacaatcgtgtggagagcatcgaccgcatgcgtgaacac
ttgctgcggctggtgccggaggcacgtattgcctcggcacatgggcagatgaacgaggat
atccttgagcaggtcatgatggacttctatgaggggcattatgacatcctgctcgcgacc
agcatcatcgaaaatggcattgacgttgccaatgcgaacacgatcatcatctacgatgct
gaccgcttcggtctctcgcagctgtatcagatgcgtggacgtgtcggccgctcggcgaag
atggcgtttgcctacttcacctatcggcgcgacaaggtgctcagcgagacagcagaaaag
cgtctccaggcgatgaaggagttcgcgcagctcggttcaggctttaagattgccatgcgt
gatctcgagatccgtggggcagggagcctcctcggtgcgcagcagcatggacatattgcg
ggtgtcggctttgagatgtacgtcaaactgctggaagaagccgtggcacgcaaaaagggc
gaggcacctgcgccgccgcccgtggagacggtgatcgacctgcccgtagaggcatatctc
gacggcgggtatattgatgatgccatgcacaagatcgagatctatcagaagattgccgct
gtgcgtacaaatgaggatctggatgcgctgctcgatgagctgattgaccgctttggcgag
ccgacagcacctgtactcgcgctgctcgacatcgcgcggatcaagaactatgcgcgcagg
ttcggcgcgcgcagcatcacggcaaagggagacgtactggatcttgcactgcctgagggt
gagaagctgtcgtttccggcactcatgcgccttgatcgtggctttgggaggcgcattgga
tcgctgcccgagggtgacggttatcgcatccgccttcagccgaaggagagcagggagata
ttggatacagtactggaaattgtgcggatggcaagtggggagtga
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integrated database retrieval system
