Salmonella enterica subsp. enterica serovar Typhimurium T000240: STMDT12_C04580
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Entry
STMDT12_C04580 CDS
T01742
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sem
Salmonella enterica subsp. enterica serovar Typhimurium T000240
Brite
KEGG Orthology (KO) [BR:
sem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sem03400
]
STMDT12_C04580
DNA repair and recombination proteins [BR:
sem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
STMDT12_C04580
Archaeal homologous recombinant proteins
STMDT12_C04580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_15
ABC_tran
nSTAND3
DUF6918
cobW
AAA_21
TsaE
ABC_ATPase
AAA_22
NTPase_1
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
BAJ35401
LinkDB
All DBs
Position
complement(484286..487426)
Genome browser
AA seq
1046 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LNTVSQSQNDLMTRDTAECLAEVEFEVKGEAWRAFWSQNRARNQPDGNLQAPRVELARCS
DGKIFADKVKDKLEMIATLTGLDYGRFTRSMLLSQGQFAAFLNAKAKERAELLEELTGTE
IYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLADQQ
GQQQHLHWLTRKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQLRPHWERIQ
EQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLNATGQRLKTWLAEHDGIRV
WRSELAGWRALLTQQSHDRAQLSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALHTR
QRPLRHRLAALQGQILPKQKRQAQLQAAIARHHQEQAQYTQRLADKRLSYKTKAQELADV
RTICEQEARIKDLESQRAHLQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVK
TLAEEGAALRGQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAG
WLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAP
EDEASWLNERADEAKIWQQRQTEFADLQMQIDRLAPLLETLPQTDTADSDDDVPLDNWRQ
AHDECVSLQSQLQTLQEQTTQEQQRAAEAIAHFDAALKNSPFDSQATFLAALLDEETVTR
LEKQQQTLESQLQQAKALSAQSAQALADHQQQPPAGLDPTCTAEQLAQRLTQLAQQLREN
TTRQGEIRQQIKQDADNRQRQRALMTEMKQASQQVEDWGYLNALIGSKEGDKFRKFAQGL
TLDNLVWLANHQLTRLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLSGGESFLVSLA
LALALSDLVSHKTRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKE
RIPVQIKVKKINGLGYSKLDKAFAVE
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagtttgcgtctgaaaaacctgaactcgctgaaaggagaatggaaggtc
gactttaccgccgaaccgtttgccagtaacgggttattcgccattaccggcccgaccggc
gcgggaaaaaccaccttgcttgacgccatctgcctggcgctgtaccacgaaacgccgcgc
ctgaatacggtatcgcaatcgcaaaacgatttgatgacgcgcgatacagcggaatgtctg
gccgaagtggagtttgaggtaaaaggcgaagcctggcgcgcgttctggagccagaaccga
gcccgaaatcagcctgacggcaatctccaggccccacgcgtagagctggcacggtgttca
gacggaaagatctttgccgataaggtaaaggataaactggagatgatcgccacgttgacc
gggctggactacgggcgcttcacccgttcgatgttgttatcacaggggcagttcgccgcc
tttcttaacgccaaagcgaaagagcgcgcagagcttctggaggagctcaccggcactgag
atttacgggcagatctccgcacaggtatttgaaaaacataaatcagcccgtctcgaactg
gaaaagttacaagcgcaggccagcggcgtcgccctattggcggacgaacagttacagcaa
ctggaagccagtttgcaggcgcttactgacgaagagaaacgcctgctggccgaccagcag
ggacagcagcagcaccttcactggctgacccgaaaaaacgagctccacactgaattacac
gcccggcagcaggcgctgtacgcggcgcaagaggcgcgagaaaaagcgcagccgcagctc
gcggcgttgacactggcgcaacctgctcgccagttgcgcccgcactgggagcgcattcag
gaacaaacccgcgccgttgagcgtgttcgccagcacagtgatgaagtgaatgctcgctta
caaagcgcgtatcgcctgcgccagcgtatccgcgcctgcgcgcatcgacaattcacgcaa
ctgaacgccacagggcagcggttgaagacatggctggcggaacacgacggcatccgcgtc
tggcgcagcgaactggcggggtggcgagcattattaacacaacaatcccacgatcgggcg
caactgagccaatggcaacagcagttgctgagcgatacgcgtcagcgtgatgcgctaccg
ccgctcacgctcgacctcacgccacaggcgctggcggaagccagagcattgcatacccgg
cagcgtccgctacgccatcgtctcgccgcgcttcaggggcaaattctcccgaaacaaaag
cgtcaggcgcagctacaggcagctatcgcgcgtcatcatcaggagcaggcgcaatacacc
caacgtctggcggataagcgtttgagttataagactaaagcgcaggagcttgcggacgtt
cgcactatttgcgagcaggaggcgcgcatcaaagatctggaaagccagcgggcgcactta
cagtccggccagccgtgtccgctttgcggctcgacgacgcaccccgccatcgccgcctat
caggcgctggaactgagcgcgaatcaaacccgccgcgacgcgctggaaaaagaggtcaaa
acgctggcggaagaaggcgcggcgctgcgaggacagttagatgccttaacgcaacaatta
cagcgggatgaaagcgaggcgcagtcgttgttgcaggaggagcaagcgcttactgaggaa
tggcaaacgctgtgcgctacgctgggcgttcagctccagccgcaagaagacctcgcgggc
tggctgaccgccgcggaagagcatgagcaacagttggatcagctcagccagcgtcatgct
ctacaaacgcaaatcgcggcgcatactgaacaggtagcgcgctttaccgcgcagattgcg
cagcgtcaggcgtcgctgacggcagatttggcgcagtatacgctttcccttcctgcgcca
gaagacgaggcttcgtggctgaatgagcgcgccgacgaagcgaaaatatggcaacagcgt
cagacagagttcgcggatttgcaaatgcagatcgacaggcttgccccgttgctggagacg
ctaccgcaaacggataccgcggattccgacgacgacgtgccgctggataactggcggcag
gcgcatgatgagtgcgtgtcattacaaagccagttgcaaaccctgcaggaacaaacgacg
caggagcagcagcgcgccgccgaggcgatagcgcactttgatgcggcgttaaaaaatagc
ccgtttgacagccaggcaacgttcctggcggcgttgctggatgaagagaccgtgacccgt
ctggaaaaacaacaacaaacgctggaaagtcagctacaacaagcgaaggcgttaagcgcg
cagtccgcgcaggcgctggctgaccatcagcaacagccgcccgcaggtctggacccaacg
tgtacggcggagcagctcgcgcagcggctgacgcagttggcgcaacaactgcgcgagaac
acgacacgccagggggaaatccgccagcaaattaaacaggatgcagataatcggcagcgc
caacgcgcgctgatgacggaaatgaagcaagcctctcagcaagtggaagactggggctat
ctcaatgcgctgatcggctctaaagaaggtgataagttccgcaaattcgcccagggactg
acgctggataatctggtctggctggcgaatcatcagctcacccgcctgcatggccgctat
ttattgcagcgcaaagccagcgacgcgctggaactggaggttgtcgatacctggcaggcc
gacgccgtgcgcgatacgcgaacgttatcaggcggcgaaagtttcctggtcagcctggcg
ctggcgctggcgttatcagatttggtcagccataaaacgcgcattgattctttgttcctc
gacgaaggcttcggcacgcttgatagcgaaacgctggacgccgcgctggatgcgctcgat
gcgctgaatgccagcgggaagaccatcggtgtgattagtcacgtggaagccatgaaagaa
cgtatccctgtgcagataaaagtgaaaaaaatcaatgggcttggttatagcaaactggac
aaagcgtttgccgtggagtaa
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integrated database retrieval system
