Salmonella enterica subsp. enterica serovar Typhimurium T000240: STMDT12_C38300
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Entry
STMDT12_C38300 CDS
T01742
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K17473
sigma-54 dependent transcriptional regulator, dga operon transcriptional activator
Organism
sem
Salmonella enterica subsp. enterica serovar Typhimurium T000240
Brite
KEGG Orthology (KO) [BR:
sem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sem03000
]
STMDT12_C38300
Transcription factors [BR:
sem03000
]
Prokaryotic type
Helix-turn-helix
Other families
STMDT12_C38300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PRD
Sigma54_activ_2
AAA_5
AAA_22
AAA
NACHT
AAA_16
Mg_chelatase
HTH_Crp_2
AAA_2
AAA_14
IstB_IS21
TrmB
AAA_24
AAA_7
nSTAND3
DUF5669
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BAJ38773
LinkDB
All DBs
Position
complement(3995445..3998243)
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AA seq
932 aa
AA seq
DB search
MRRIEIVLGELERLTRGLCLADLAQETAFTAEAIGFNLGLARNSVSKDLNQLWNDGLAIK
SRGRPVYFLHRQALETLLGRQLEESEREVRSVADVLPHEEHYAPDDPFTSLIGYDRSLRD
AVEKGRAAVLYPHGLHVLLTGPSGVGKTFFAELMHRFACEQASGAIPPLVYFNCAEYAHN
PELLSSHLFGHRQGAFTGANEHKTGLVEQADGGYLLLDEVHRLSYEGQEKLFSILDKGEY
RPLGVSSQPRSISVRLICATTEPVGSALLRTFQRRIQVCIDLPGIRQRSVEEQIELIVGF
LQRESRKIERTVSIDKPLLLWLLNKPLEGNIGQLKSDIQFLCAQAWASGMTEHNDTLQLD
KRLAEMSVNPTPEQRLLVDTLFEGKARLNIDARTLPALKTSLATGAEIEESDLFYSFLTR
EYVNLRNSNVPPAETLAILKNKLSSIFEYGLYSRDSVAHPPRYGDQIEERVTLLIGCVEQ
VLGFSLPENLVNPLRKHFLALIGYVQRGLIPQLYSSSLILDRCKDEYDNATLLCRKINEL
LHIQCPATEVVWLCLFLKECRHYRQRIDASPDCGVILIAHGATTATSQAQYVNRVLEREL
FSAIDMPFEQSVHDTLETLTQMIQTRQYRRLILLVDIGSLIHFGSTISKLFQIDVLLMPN
ITLTSLLEVGLDLSYETSDLPQLTALLQSKNIPCQLCTPQQENGGKVLVISCITGMGTAE
KIKKVLEESFGELMSQDTRMVILDYNEVRSLERVQQALNASERLAGIVGTFQPGLPDIPF
ISLEELFSEQGPELVLSLLTPDLSNAERRLEMERSAMRFISALTMESIINHISVLNPQRI
LKEMEGVFNHLTSSLSLKPSRQVTLRFLIHCCCMVERIVINRKPLQMALESQPNLDARAF
SVIKSAFLPIEDAYAIRLSDAEYFYIYELLYS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagacgtattgagatcgtactgggagagctggaacggctgacgcgcgggctatgtctt
gccgatttggcgcaggagacggcgtttacggcggaggcgataggtttcaatcttgggctg
gcgcgtaactccgtcagcaaagatctcaatcagttatggaatgacggcctggcaatcaaa
agccgtggccgcccggtctattttctgcatcgccaggcgctggaaacgttgctgggacga
cagctggaagagtctgaacgcgaggtgcggtcggtggcggatgtgctgccgcatgaagag
cattacgcgcccgacgatccgtttaccagcctgattggttacgatcgcagcctgcgcgat
gcggtagaaaaaggccgtgcggcggtgctctatccgcacggtttacacgttctgcttacc
gggccgtccggcgtcggtaaaaccttttttgcggaactgatgcaccgtttcgcctgtgaa
caggcgagcggcgctatcccgccgctggtctactttaactgcgcggaatacgcccataac
ccggaactgctctcctcgcatctgtttggtcatcggcagggggcgtttaccggcgcgaat
gaacataaaacaggcctcgtggagcaggcggacggtggttatctgctgttggacgaggtg
caccgtctgtcttatgaagggcaggaaaagctgttctctattctggataaaggcgagtac
cgtccgctcggcgtgagcagccagccgcgatcaatttcggtacgcctgatttgcgccact
accgagccggtcgggtcggcgctgttacgtactttccagcggcgtattcaggtatgcatt
gatttgccgggcattcgccagcgctccgttgaagaacagatcgaactgatcgtggggttc
ttacagcgggaaagccgcaaaatagaacgcacggtcagcattgataaaccgttgttactc
tggttgctgaataaacccctggaaggcaatatcggtcagcttaaaagcgatattcagttt
ctctgcgctcaggcgtgggcatcgggaatgaccgagcataacgacacgctacagctggat
aagcggctggcggaaatgtcggttaacccgacgccggaacagcgtctattggtggatact
ctgtttgagggtaaagcgcggctaaatatagacgcgcgcacgctgcccgcattgaagacg
tcgctggcgaccggggcggaaattgaagagagcgacctcttttacagcttcctgacgcgc
gagtatgttaatttgcgcaacagtaacgtccccccggcggagacgctggcgatcctgaaa
aataaactcagctcgatttttgaatacggtctctacagccgtgacagcgtggcgcatccg
ccgcgctatggcgaccagattgaagagcgcgtgacgctgctgattggctgcgtagagcag
gtgttgggcttttcgctgccggaaaatctggttaacccactgcgtaaacacttcctggcg
ctgataggctacgtgcagcgcggcctgatcccgcagctttactcttccagtttgatcctg
gatcgctgcaaagacgaatatgacaacgccacgctgctgtgtcggaaaatcaacgaactg
ctgcatattcagtgtccggcgacggaagtggtctggctatgcctgttcctgaaagagtgc
cgccattatcgtcagcgtatcgatgccagccccgactgcggggttattttaatcgcccac
ggcgcgaccaccgccaccagtcaggcgcaatatgtcaaccgcgtgctggagcgcgagctg
ttcagcgccatcgacatgccgtttgaacagtcggtgcatgacacgctggaaacgctgacc
caaatgattcaaacccgccaatatcggcggcttatcctgttggtggacatcggctcattg
atccatttcggcagtacgatcagtaagttattccagatagatgttttgctcatgccgaac
atcacgctgaccagtctgctggaagtcgggctggatttaagctatgaaaccagcgactta
ccacagttgacggcgctcctgcagagtaaaaatatcccctgccagctttgtacgccgcag
caggagaacggcggcaaagtgctggtcatctcctgtattactggcatgggaacggcggaa
aaaatcaaaaaggtgctggaggagagctttggcgaactgatgtcgcaggacaccaggatg
gtgatccttgattataacgaggtacgaagtctggagcgcgttcagcaggcattgaatgcc
agcgagcggctggcggggattgtcggcactttccagccggggctgccggatattccgttt
atttcgctggaagagcttttctccgaacaagggccggaactggtgttgagcctgttaacg
cccgatctgtccaacgctgaacgccgtctggagatggagcgcagcgccatgcgctttatc
agcgcgctaacgatggagagtatcatcaaccatatttccgtgcttaacccgcagcgtatt
ctgaaagagatggagggcgtttttaaccatctgacgtcttcgctttccctgaaaccaagc
cgccaggtgacactgcgcttcctgatccactgctgctgtatggtagagcgtattgtgatt
aaccgaaaaccgttacagatggcgttggaaagtcagccgaatctggacgcgcgcgcgttt
agtgtcatcaaatccgcttttctgccgatcgaagacgcctacgccatccgtttatcggat
gcggaatatttttatatctacgaactgctctatagttaa
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