Sideroxyarcus emersonii: MIZ01_0343
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Entry
MIZ01_0343 CDS
T08108
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
seme
Sideroxyarcus emersonii
Brite
KEGG Orthology (KO) [BR:
seme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seme03019
]
MIZ01_0343
Enzymes [BR:
seme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MIZ01_0343
Messenger RNA biogenesis [BR:
seme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MIZ01_0343
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
T2SSE
nSTAND_NTPase5
PhoH
FtsK_SpoIIIE
NACHT
AAA_25
SLFN-g3_helicase
NTPase_1
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
BCK86580
UniProt:
A0AAN1X874
LinkDB
All DBs
Position
358488..362393
Genome browser
AA seq
1301 aa
AA seq
DB search
MNAALSPLAQRRLARIQQLSAIEYPADLPVVARREELAQAIEKHQVVIVCGETGSGKTTQ
LPKICLSLGRGVLGVIGHTQPRRVAARSVGARIAHELKSELGGLVGYKVRFNDKVSPDTC
IKLMTDGILLAEIHHDPNLRQYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKLIITS
ATLDAERFSKHFGNAPVLQVSGRTYPVEVRYRPPQQNEEGDTQDVPQAVCSALDELSIGG
LKGDVLVFLPGEREIRDTAEALRKHQHKGIEILPLFSRLSIAEQDRVFKLASGMRRVVLA
TNVAETSLTVPNIGYVIDSGLARINRYSVRQKVEQLRIENISRAAANQRAGRCGRVMSGI
CIRLYDEADFLQRPEFTDAEIFRVSLATVILRMSALGLGEVEAFPFIEPPGSRAIADGYQ
LLQELNAIDDKRTLTPLGHELAKLPLDPKVARLLLAGRQFHCLNEILIIASALALQDPRD
RPAERREAADAAHQRFNDERSDFLAYLKLWAWFQEAIKHKKSNKLWANECREKFLSPLRL
REWHELHQQLHAQVSEMGMFEPNSRIDRQSGADRNPAEKNIPRSGQNPSVAPLRGDVENH
LDSGLRRNDGSSSQPATYEQIHKALLTGLLGNIGCKGVDKEPYYLGPREIKFFIASNSVL
AKKGTKWVVAAEIVETTKLFARCVARIEPEWLEEVGAHLIKRSYFEPHWEKKAAQVAAWE
RSTLYGLLINPKKRVHYGPMNPEESREVFIREALVNGEFNTQAPFFAYNQKLIADIEALE
HKARRPDVLVDDELIFAFYDARIPAGIHNGAAFEHWRKEVEREQPKLLYLKKDDLMRHEA
AGITTEQFPPQMLMNNVSYALAYNFAPGKNDDGVTLTVPQALLNQVSAARCEWLVPGILA
EKVAQLVKSLPQKLRRHCVPVPEFAAAFCAGVKVSDTPLLQALARYIREQKQVDVPLDAF
RLEQLPPHLLMNFRVVDEHGRQLGMSRNFAQLRGEWSPKQAVAAPVQTARNAAPQQKSSG
ERYTEWRFGDFKPTREESRAGQTVTVFNALVDEGDAVTLQSFDTRDEAQAAQRLGLRRLF
MLALKEQVKYLEKNLPSLQAMAMQFLPFGSQQDLQRQILAVTFDRCCLNDPWPESEKEFA
SRSKEAKARLNLVAQEIARLVGAVLAEYHTLQKALPGFKAHGQVQQDIRSQCEWLLGKEW
IARTPYERMQHMPRYLKAINVRLEKLRTNPARDAQNMAQMNPLLQQWQRRLSSQHGEADA
RLEDFGWMLQELRVSLFAQELKTPVIVSVKRLEKMLAGLSG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcagccctgtcccccctcgcccaacgccgtctggcgcgtatccagcaactctcc
gccatcgaataccccgccgacctgcccgtggtggcgcggcgcgaggagttggcgcaggcc
atcgaaaaacaccaggtggtcatcgtttgcggcgagaccggctcgggcaagaccacgcag
cttcccaagatatgtttgagcctggggcgcggtgtgctcggcgttatcggccacacccag
ccgcgccgcgtggcggcacgctcggtcggcgcgcgcatcgcgcatgaactgaagtccgag
ctcggcggtctggtcggttacaaggtgcgcttcaacgacaaggtgtcgcccgacacctgc
atcaagctgatgaccgacggcatcctgctggccgagatccaccacgacccgaatctccgt
caatacgacaccatcatcatcgacgaggcgcacgagcgctcgctgaacatcgatttcctg
ctcggttacctgcgccaattgctgccgcgccgccccgatctcaagctcatcatcacctcg
gccacgctggatgcggagcgcttttccaagcacttcggcaatgcgccggtgctgcaggtc
tccggccgcacctatccggtcgaagtgcgctaccgtccgccgcagcagaacgaggagggc
gacacccaggatgtaccgcaggcagtgtgtagtgcgctggacgaactgagcatcggcggc
ctcaagggcgacgtgctggtgttcctgcccggcgagcgggagatccgcgacactgccgag
gcactgcgcaagcaccagcacaagggcatcgagatcctgccgctgttctcgcgcctgtcc
atcgccgagcaggatcgcgtgttcaagctcgcctccggcatgcgccgtgtggtgctggcg
accaacgtggcggagacttcgcttaccgtgcccaatatcggttacgtgatcgacagcggc
ctggcgcgcatcaaccgctacagcgtgcggcagaaggtggagcagctgcgcatcgagaac
atctcgcgcgccgccgccaaccagcgcgccggccgttgcggccgcgtgatgagcggcatc
tgcatccgcctgtacgacgaggcggatttcctgcagcgcccagaattcaccgacgccgag
atttttcgcgtgtcgctggccacggtcattctgcgcatgagtgcgctgggcctgggcgag
gtggaggcgttcccgttcatcgaaccgccgggttcgcgcgcgatcgccgatggctaccag
ttgctgcaggaactcaatgccatcgacgacaagcgcacgcttacgccgctcggccatgaa
ctggccaagctgccgctcgatcccaaggtggcgaggctgttgctggcgggacggcaattt
cactgcctcaacgagatcctcatcatcgccagcgcgctggcgttgcaggatccgcgcgac
cgcccagccgaacggcgcgaggcggcggacgcggcgcaccagcgcttcaacgacgagcgc
tccgatttccttgcctatctcaaactgtgggcctggttccaggaagcgatcaagcacaag
aagagcaacaagctgtgggcgaacgagtgccgcgagaaattcctgtcgccgctgcgcctg
cgcgagtggcacgagctgcaccagcaattgcatgcgcaggtgtcggagatggggatgttc
gaaccgaacagccgaatcgaccgtcaatccggcgcagaccggaatccagccgaaaaaaat
atcccgcgaagcggacaaaatccaagcgttgccccactgcgtggggatgttgaaaatcat
ctggattccggcctgcgccggaatgacgggagtagttcacagcccgccacctacgagcag
atccacaaggcgttgctgaccggcctgctcggcaacatcggctgcaagggggtggacaag
gagccgtattacctcggcccgcgcgagatcaagttcttcattgcatcgaattcggtgttg
gcgaagaagggcacgaaatgggtagtggcggccgagatcgtggagacgaccaagctgttc
gcgcgttgcgtcgcgcgcatcgagccggagtggctggaagaggtcggcgcccatttgatc
aagcgcagctatttcgagccgcactgggagaagaaggcggcgcaagtggcggcgtgggag
cgcagcaccctgtacgggttgctgatcaacccgaagaagcgcgtgcactacggaccaatg
aacccggaggagtcgcgcgaggtgttcatccgcgaggcgctggtgaacggcgagttcaac
acgcaggcaccgttcttcgcctataaccagaagctgatcgccgacatcgaggcgctggaa
cacaaggcgcgccgccccgatgtgctggtggacgacgaactgatctttgcgttctacgat
gcgcgcatcccggccggcatccataacggcgcggcattcgagcattggcgcaaggaggtc
gagcgcgagcagccgaaactgctgtacctgaaaaaagacgacctgatgcggcacgaggcg
gccggcatcaccaccgagcagttcccgccgcagatgctgatgaataacgtgagctatgcc
ttggcctacaacttcgcgccgggcaagaacgacgacggcgtcacgctgaccgtgccgcag
gcgttgctgaaccaggtgtcggcggcgcgttgcgaatggctggtgccgggcatcctggcg
gagaaggtcgcgcaactggtgaagtcgctgccgcagaaactgcgccgccattgcgtgccg
gtgccggaatttgcggcggcgttctgcgccggagtgaaagtttccgatacgccgctgttg
caggcattggcgcgttacatccgcgagcagaagcaggtcgacgtgccgctggatgcgttc
cggctggaacagctgccgccacacctgctgatgaacttccgtgtggtagacgagcacggg
cgccagctcggcatgtcgcgcaattttgcgcaattgcgcggcgagtggtcgccgaagcag
gccgtggctgcgccagtgcagactgcccggaatgctgcgccacaacagaagagcagcggc
gaacgctataccgaatggcgcttcggcgacttcaagccgacgcgcgaggagagccgggcc
ggacagaccgttaccgtgttcaacgcgctggtggacgagggcgacgcggtaacgctgcag
agttttgatacgcgcgatgaagcgcaagctgcacaacgcctgggcttgcgccgcctgttc
atgctggcgctgaaagaacaggtgaaatacctggagaagaacctgcccagcctgcaggcg
atggcgatgcagttcctgccgttcggctcgcagcaggacctgcagcggcagatcctggcg
gtgaccttcgatcgctgctgcctgaacgatccctggccggaaagcgagaaggaattcgcc
tcacgcagcaaggaggccaaggcgcgcctgaacctggtggcgcaggagatcgcacggttg
gtcggcgcggtgctggcggaataccacacgctgcaaaaggcgctgcccggattcaaggcg
catgggcaggtgcaacaggacatccgcagccagtgcgaatggctgctgggcaaggaatgg
atagcccgcacgccatacgagcgcatgcagcacatgccgcgttacctgaaggcgatcaac
gtgcggctggagaagctgcgcaccaacccggcacgcgatgcgcagaacatggcgcagatg
aatcccctgttgcagcagtggcagcgccggctgtcgtcgcagcatggcgaagccgatgcg
cggctggaggatttcggctggatgctgcaggaactgcgcgtgtcgctgttcgcgcaggag
ctgaaaacgccggtgatcgtgtcggtgaaacggctggagaagatgctggccgggttaagc
gggtag
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