Sideroxyarcus emersonii: MIZ01_0395
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Entry
MIZ01_0395 CDS
T08108
Name
(GenBank) exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
seme
Sideroxyarcus emersonii
Brite
KEGG Orthology (KO) [BR:
seme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seme03016
]
MIZ01_0395
Enzymes [BR:
seme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MIZ01_0395
Transfer RNA biogenesis [BR:
seme03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MIZ01_0395
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BCK86631
UniProt:
A0AAN2BY40
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All DBs
Position
complement(413273..415192)
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AA seq
639 aa
AA seq
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MNIFYEEEGGFKVGNILADNTTSLQVENTHGKRSKIKAANVMLRFAQPGLSEFMTQAEQV
AAGIDVDFLWEACPADEFDFDALARDYFGHAPNPVEAAGALIRLHSSPMHFYKKGKGRYK
AAPADALKAALASVEKKRLQTEQQARYTEELTQFKLPAEFDGKLDALLYRPDRNTIEVKA
LEAACAATHLSAAHLLERCGALPSTHDYHLNKFLFENFPRGTGFPEVAVAEHPELPLAPV
TAFSIDDASTTEIDDAFSVEQLPNGNWRIGIHIAAPALGIAPGSPIDIIAAQRMSTVYMP
GDKITMLPDNVVQAFTLCADKVCPALSLYVEVDAATLAILGSESRVERLHIASNLRHDTL
EPLFNEQTLAAGKLDYDHAAELKLLWDFVQKLEAARGKSADNSTQQIDYTFHVENDRITI
GHRLRGSPIDKVVSELMILANSTWGKLLDDRKVAGIYRTQNNGKVKMSTVAAPHQGLGVS
HYAWSSSPLRRYVDLVNQRQLISVLREETPAYAKNDTALFAILRDFDTAYTTYNEFQRNM
ERYWCLRWLLQEKEKVEALTPTLSRIAGEGANDSLRELILPAIVLRENLVKFADIPLVGR
VPSLPELPPSTRVTLEIASVDLLDLEFEARYLASQETPA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaacatattttacgaagaagaaggcggtttcaaggtcggcaacatcctcgccgacaac
accacctccctgcaggtcgagaacacccacggcaagcgcagcaagatcaaggcggccaac
gtcatgttgcgcttcgcccagcccgggttgtcggagttcatgacccaggcggaacaggtc
gccgccggcatcgacgtggatttcctgtgggaagcctgcccggcggacgagttcgatttc
gacgccctggccagggactacttcggccatgcgccgaatcccgtcgaagcggcaggggcg
ctgatccggctgcactcttcgccgatgcatttctacaaaaaaggcaaaggccgctacaag
gcagcgcctgccgacgcactcaaggccgcgctggccagcgtggagaagaagcgcctgcaa
accgaacagcaggcgcgctataccgaagaactcacgcagttcaaactgccggcggaattc
gacggcaagctggatgcgctgctgtacaggcctgaccgcaacaccatcgaagtcaaggcg
ctggaagcggcctgtgccgccacccacctgtcggcggcacacctgctggaacgttgcggc
gcgctgccgtccacgcacgattaccacctgaacaagttcctgttcgagaacttcccgcgc
ggcaccggctttcccgaggtcgccgtggcagaacatccggaattgccgctggcgccggtc
accgccttcagcatcgacgacgccagcaccaccgagatcgacgacgcgttctcggtcgag
cagctgccgaacggcaactggcgcatcggcatccacatcgccgcccccgcgctgggcatc
gctcccggctcgcccatcgatatcatcgccgcacagcgcatgtccaccgtgtacatgccg
ggcgacaagatcaccatgctgccggacaacgtggtgcaggccttcacgctgtgcgcggac
aaggtctgcccggcactgtcgctgtatgtggaggtggatgccgcaacgctcgcgatcctc
ggcagcgaaagccgcgtcgagcgcctgcacatcgcctccaacctgcgccacgacacgctg
gaaccgctgttcaacgaacagacactggcggcaggcaagctcgactacgaccacgccgca
gaattgaaattgttgtgggacttcgtgcagaaactggaagccgcgcgcggcaagtccgcc
gacaacagcacgcagcagatcgactacaccttccacgtcgagaacgaccgcatcaccatc
ggccaccgcctgcgcggttcgcccatcgacaaggtggtgtcggaactgatgatccttgcc
aacagcacctggggcaagctgctggacgaccgcaaggtggccggcatctaccgcacgcag
aacaacggcaaggtgaagatgagcaccgtcgcagcgccgcaccagggcctgggcgtgtcg
cactacgcctggtcgagctcgccgttgcgccgctatgtcgacctggtgaaccagcgccaa
ctcatcagcgtgctgcgcgaggaaacgccggcctacgcgaagaacgacactgcgctgttc
gccatcctgcgcgacttcgacaccgcctacaccacctacaatgaattccagcgcaacatg
gaacgctactggtgcctgcgctggctgctgcaggaaaaagaaaaagtggaagccctcacc
ccaaccctctcccgcatcgcgggcgagggggcaaacgactcgctgcgcgaacttatcctt
cctgcgatcgtactgcgcgagaacctggtcaagttcgccgacatcccgctggtcgggcgc
gtcccgtcgttgcctgaattgccgcccagtaccagggtgaccctggagatcgcctcggtt
gacctgctcgatctggagttcgaggcgcgctatctggccagccaggaaacacccgcatga
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