Sideroxyarcus emersonii: MIZ01_1231
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Entry
MIZ01_1231 CDS
T08108
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
seme
Sideroxyarcus emersonii
Pathway
seme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIZ01_1231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seme03019
]
MIZ01_1231
03016 Transfer RNA biogenesis [BR:
seme03016
]
MIZ01_1231
Enzymes [BR:
seme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MIZ01_1231
Messenger RNA biogenesis [BR:
seme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MIZ01_1231
Transfer RNA biogenesis [BR:
seme03016
]
Prokaryotic type
tRNA degradation factors
MIZ01_1231
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HTH_12
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
BCK87452
UniProt:
A0AAN1XA98
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All DBs
Position
1231278..1233578
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AA seq
766 aa
AA seq
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MTKKKKNIRELDPFLEREREQYEHPLPSREYILQVLAEKGVPIEQDELCSLLQIEHHEEE
LFLRRLRAMERDGQIMRNRKRAICVVDKLDLIKGKVQGHPDGFGFLIPDDGSPDLVLSAK
EMHKALHGDTVMARVGGEDRRGRREASIVEVLECANTRVVGRLYEEHGIQFVVAENRRIS
QDILVAPGASGGAKTGQVVILEILQQPSKHAQPIGRIVEVLGNYADPGMEIEIALRKHDL
PNEFPHEAKKQAEAFSPEVKPSDYAGRESVVKLPLVTIDGETARDFDDAVYCEPNGKGFR
LVVAIADVSSYVQSGDALDKEAINRGNSVYFPRRVIPMLPEELSNGLCSLNPNVERLCMV
CDMQISASGDILQHRFYPSVMFSHARLTYTQVADMLANPQGENAQKYAEVLPHINNLYKL
FQTLLQAREKRGAIDFETVETQMIFNDQGKIEKIVPVIRNDAHKLIEECMLAANVCAAAF
LKEHNHPVLYRIHEGPTPEKLEAVREFLKEFGLQLGGGDDPQAADYSKLLKQIKSRPDAG
LLQTVMLRSLRQAVYAPENAGHFGLGYEAYTHFTSPIRRYPDLLVHRAIKAVLQGKQYKP
QLKWAELGVHCSMTERRADDATRDVEAWLKCFYMRDHLGSVFEGTISSVTGFGLFVALDD
LYVEGLVHVSELGADYFHFDPAKHMMLGERTGKRYRLGDRVRVKVVRVDMESTKIDFVLE
GETAKVVVEGAGPIDVGAWGAAPPPKKAHKSEKAGKSTGKAGKHHG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagaaaaaaaatatccgcgaactcgacccgtttctggaacgggaacgcgaa
cagtacgaacatccgctccccagccgggaatatatcctgcaggtgctggccgaaaaaggg
gtgccgatcgagcaggacgagctgtgcagcctgctgcagatagagcaccacgaggaggag
ctgttcctgcgccgcctgcgcgcgatggagcgcgacggccagatcatgcgcaaccgcaag
cgtgccatctgcgtggtggacaagctcgacctgatcaagggcaaggtgcagggccatccc
gacggtttcggcttcctgatcccggacgacggcagcccggacctggtgctgagcgccaag
gagatgcacaaggcgctgcatggcgatacggtgatggcaagggtaggcggcgaagacaga
cgcggccgccgcgaggccagtatcgtcgaggtgctggaatgcgccaatacccgcgtggtt
ggccgcctgtatgaagaacatggcatccagtttgtggtggccgagaaccggcgcatcagc
caggacattctggtcgcgcccggggcgtccggcggggccaaaacagggcaggtggtgatc
ctcgagatattgcagcagccttccaagcatgcgcagccgatcggccgtatcgtcgaggtg
ctgggcaactatgccgatcccggcatggagatcgagatcgccttgcgcaagcacgatctg
cccaacgaatttccgcacgaggcgaaaaagcaggccgaagccttctcgccagaagtgaag
ccgtccgattacgccggacgcgagagtgtggtcaagctgccgctggtgaccatcgacggc
gaaacggcacgggatttcgacgatgcggtgtattgtgaaccgaacggcaagggtttccgc
ctggtggtggcgattgccgacgtcagctcctatgtgcagtccggcgatgcgctggacaag
gaagcgatcaaccgcggcaactcggtgtatttcccgcgccgcgtcatcccgatgctgccg
gaggaactttccaatggcttgtgctcgctgaatcccaatgtcgagcgcctgtgcatggtg
tgcgacatgcagatctctgcttccggcgatatcctgcagcatcgcttctacccgtccgtg
atgttctcgcatgcgcgcctgacctatacccaggtcgccgacatgctggccaatccacag
ggcgagaatgcacagaaatatgcggaagtgctgccgcacatcaacaacctgtacaagctg
ttccagaccttgctgcaggcacgcgagaagcgcggagccatcgatttcgaaacggtcgag
acgcagatgatattcaacgaccagggcaagatcgagaagatcgtgccggtgatccgcaac
gatgcgcacaaactgatcgaagagtgcatgctggcggccaacgtctgtgcggcggcgttc
ctgaaagagcataaccatccggtgctgtaccgcatccatgaggggccgacgccggagaag
ctggaggcggtgcgcgaattcctcaaggagttcggcctgcaactgggcggcggagacgac
ccgcaggcagccgactattccaagctgctcaagcagatcaaatcccgacccgatgccggg
ctgctgcagaccgtgatgctgcgctcgctgcgtcaggccgtgtatgcgccggagaatgcc
ggccatttcggccttggctacgaggcctatacccacttcacctccccgatacggcgttat
ccggacctgctggtgcaccgcgccatcaaggcggtgctgcaaggcaagcaatacaagccg
caactcaagtgggcggaactgggcgtgcactgctcgatgaccgagcgccgtgccgacgac
gccacgcgcgacgtggaagcctggctcaagtgtttctacatgcgcgaccatctgggcagc
gtgttcgagggcaccatttcctcggtcaccggtttcggcctgttcgtggcgctggacgat
ctgtatgtcgaaggcctggtgcatgtatccgaactgggggccgactatttccacttcgat
ccggccaagcacatgatgctgggagagcgcaccggcaagcgttaccgccttggcgaccgc
gtgcgcgtgaaggtggtgcgcgtggatatggaaagcaccaagatcgatttcgtgctggaa
ggcgagaccgcaaaggtggtggttgaaggtgccggtcctatcgatgtcggcgcctgggga
gcggcgccgccgccgaagaaggcgcataaatcggagaaagccggaaagagcaccggaaag
gcaggcaagcatcatggctga
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