Sideroxyarcus emersonii: MIZ01_1542
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Entry
MIZ01_1542 CDS
T08108
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
seme
Sideroxyarcus emersonii
Pathway
seme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIZ01_1542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seme03019
]
MIZ01_1542
03009 Ribosome biogenesis [BR:
seme03009
]
MIZ01_1542
Enzymes [BR:
seme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MIZ01_1542
Messenger RNA biogenesis [BR:
seme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MIZ01_1542
Ribosome biogenesis [BR:
seme03009
]
Prokaryotic type
rRNA processing factors
MIZ01_1542
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2HC
Motif
Other DBs
NCBI-ProteinID:
BCK87749
UniProt:
A0AAN1XAT9
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All DBs
Position
1543527..1546010
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AA seq
827 aa
AA seq
DB search
MKRMLFNATQPEELRVAIVDGQKLIDLDIETAGKEQRKSNIYKAIITRIEPSLEACFVEY
GGTRHGFLPFKEVSPQYYQPGAGSRSSIKEALKEGQELLVQVEKDERGNKGAALTTYISL
AGRYIVLMPNNPNGGGVSRRIEGEDRNELRDVLAQMEVPHGMSIIARTAGIGRNLEELQW
DLDYLKQLWDAIEGAAKAEKAPSLIYLESSLVVRAIRDYFNPEIGEILIDTDDIFQQAQA
FMGTVMPDHVDRIKRYHDDVPLFSRFQIEHQIESAHARQVNLPSGGAIVIDHTEALTAID
INSARSTRGGDIETTAYNTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKNQREVENRL
RDALHFDRARIQTAKISRFGLLELSRQRLAPSLEESNHTTCPRCNGIGHIRGTESSALNI
LRIIQEEAMKDSSAAIHAQVPVDVATFLLNEKRNDIHRIESRFKVGVTIIPNPHMETPHY
SVNRLRQDDITADHLQASYKLVEKPEETKPATTPTAQEIKAQRPQAAVRGITPAQPAPKH
EVKVEKKTSLLGGLFGWFKSLGGESEPEKPAAPAKGSRNNQRRERGERGERGEGGNKPRR
ERAERGERGEGGNKPRREREEAPRGDKAQAENRGERQQQQPRQPRPANAEKPVLETPKPL
AAGEQGEEGSGNGNREGRKRGRRGGRRERERREQQGVAPAGGNGEAQVSEQAVAAAPVPA
TRAKPTEYIAYPESMKRAKPTEVVCYPTQTVAQPVQAAAAAVAPVAAPIDLSNSGLTMIE
TDPNKAASIAPVPESHGHAPRRRQRPREVYTIENNEPLQQVETQTRN
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttattcaatgcgacgcagccggaagaactccgcgtcgccattgtggac
ggtcagaaactcatcgacctcgacattgaaaccgccggcaaagagcagcgcaaaagcaac
atctacaaagccatcatcacccgcatcgagcccagcctcgaagcctgtttcgtggaatac
ggcggtacccgccacggtttcctccccttcaaggaagtctccccccagtattaccagccc
ggcgccggcagccgttcttccatcaaggaagcgctgaaagaaggccaggaactgctggtt
caggtggaaaaagacgagcgcggcaacaagggcgccgccctcaccacatatataagtctg
gccggccgttacatcgtgctgatgccaaacaaccccaacggcggcggtgtttctcgccgt
atcgaaggcgaggaccgcaacgaattgcgcgacgtgctggcgcagatggaagtgcctcat
ggcatgagcatcatcgcccgcaccgccggcatcggccgcaacctggaagagctgcagtgg
gacctggattacctcaagcaactgtgggacgccatcgaaggcgccgccaaagcagaaaaa
gccccgtcgctgatctacttggaaagcagcctggtcgtgcgcgccatccgcgactacttc
aacccggagatcggcgagatcctgatcgacaccgatgacatcttccagcaggcgcaagcc
ttcatgggcacggtgatgccggaccatgtcgaccgcatcaagcgctaccacgacgatgta
ccgctgttctcgcgcttccagatcgagcaccagatcgagtccgcccatgcacgccaggtg
aacctgccttccggcggcgccatcgtgatcgaccataccgaagccctgaccgcgatcgac
atcaactccgcacgttcgacgcgcggcggcgacatcgaaaccaccgcctacaacaccaac
ctggaagcggccgacgagattgcccgacagttgcgcctgcgcgacctgggcggcctcatc
gtcatcgacttcatcgacatggaatcgagcaagaaccagcgcgaagtggagaaccgcctg
cgcgacgccctgcacttcgaccgtgcccgcatccagactgccaagatctcgcgtttcggc
ctgctggagctgtcgcgccagcgcctggcacccagcctggaagaaagcaaccacaccacc
tgcccgcgctgcaacggcatcggccatatccgcggcacggaatcgtccgcgctgaacatc
ctgcgcatcatccaggaagaagcaatgaaggacagcagcgccgccatccatgcacaggtg
ccggtggacgtagccaccttcctgctcaacgaaaagcgcaacgacatccatcgcatcgaa
tcgcgcttcaaggtcggcgtcaccatcatccccaatccgcatatggaaacgccgcactac
agcgtgaaccgcctgcgccaggacgacatcactgccgaccacctgcaagccagctacaag
ctggtggaaaaaccggaagaaaccaagccggcgactacgcccactgcccaagagatcaag
gcacagcgcccgcaagctgcggtgcgcggcatcaccccggcacaaccggctcccaagcat
gaagtcaaggtggagaagaagacctccctgctcggcggactgttcggctggttcaagtcg
ctgggcggtgaaagcgaacccgagaaacccgcggcacccgccaagggcagtcgcaacaac
cagcgccgcgagcgcggggaacgtggcgagcgcggcgaaggcggcaacaaaccgcgccgc
gagcgggcagaacgtggtgagcgcggcgaaggaggcaacaaaccgcgccgcgagcgcgaa
gaagctccgcgcggcgacaaggcccaggcagagaatcgcggcgagcgccagcaacagcag
ccgcgccagcctcgcccggccaacgcggaaaaaccggtactggaaacgcccaagccgctc
gcagcgggtgaacagggcgaagaaggcagcgggaatggcaaccgcgagggccgcaagcgc
ggtcgccgcggcggccgtcgcgagcgcgagcgtcgcgagcagcaaggtgtggccccggcc
ggtggcaatggcgaggcccaggtgagcgaacaggctgtcgcagccgcgccggttccagcc
acccgcgccaagccgaccgaatacatcgcctacccggaatcgatgaagagagcgaagccg
accgaagtggtgtgctacccgacccagaccgtggcgcaacccgtccaggcagcggcagca
gccgttgcaccggtcgccgccccgatcgacctgagcaacagcggcctgaccatgatcgag
accgatccgaacaaggcggccagcatcgcccctgtgccggagagccacggacatgcaccg
cgccgtcgccagcgtccacgcgaggtctataccatcgaaaacaacgaaccgttgcaacag
gtggaaacgcaaacgcgcaactga
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