Sideroxyarcus emersonii: MIZ01_1986
Help
Entry
MIZ01_1986 CDS
T08108
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
seme
Sideroxyarcus emersonii
Pathway
seme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
seme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MIZ01_1986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seme03400
]
MIZ01_1986
Enzymes [BR:
seme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIZ01_1986
DNA repair and recombination proteins [BR:
seme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MIZ01_1986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCK88185
UniProt:
A0AAN1XB64
LinkDB
All DBs
Position
2020395..2023814
Genome browser
AA seq
1139 aa
AA seq
DB search
MLFDSTHSRPRYSNLQGSSDALALAQYAAQLAPPGKTPLVIIAANALEAQRLVEEIPFFG
PGLRVHLLPDWETLPYDHFSPHQDLVSERLATLHHIRSNASDVVIVPITTALYPLPPVEH
LAAYTFFLKRGEKLNLAQLREQLTFAGYNHVQQVLTPGEYCVRGGIIDLFAMGSVLPYRI
DLFGDEIETIATFDVDTQRTLYPVPEIRLLPAREFPMDEKGQATFRQNFRDRFEGDPSKS
RIYKDVSKGIAPAGIEYYLPLFFHKTATLFDYLPKNATLCLHHDVDEAIATFGKDAASRY
NLLRGDPQRPLLETKELFLDAEQFFIRVKEFARLDIVTNEAGATLTACPTAAIPPIAVDR
RAEVPTQKFEDFLRGYQGRVLLLADSLGRREIMSGYLREYGLIPSVCEDYASFLAGQDKF
MLGVGPVQFGFALPDDNIAIVTETELYAAQPRNRAARATKKSNVEGMLRDLSELKPGDPV
VHEQHGIARYQGLVNLDLGEGENEFLLLEYAGEDKLYVPVSQLHVISRYSGGAPEAAPLH
KLGSGAWDKAKRRAMQQVRDTAAELLNLYAQRATRKGHAFKFTYHDYEAFAAGFGFEETA
DQAAAIEAVLLDLQSGKPMDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPTTLLAE
QHFQNFSNRFADWPIKIAELSRFRSSKETTQALQGLAEGKIDIIIGTHKLIQKDVKFHNL
GLVILDEEHRFGVQQKERLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRR
LSIKTFVSNFSQGVIREAVLRELKRGGQVYFLHNEVDTMPNMLEKLETLLPEARIRMAHG
QMNERELEAVMRDFHHQRFNLLLCSTIIETGIDVPTANTIIMNRADRFGLAQLHQLRGRV
GRSHHQAYAYLLVDSMDGLTAQAKKRLEAIQAMEQLGSGFFLAMHDLEIRGAGEVLGESQ
SGEMQEIGFSLYNDMLNAAIKSLKAGHEPDMAHPLGVTTEINLHTPALLPNDYCGDIHQR
LVIYKRLANCDTQQDLDDMQQELIDRFGLLPAPAQTLLDSHRLRILAKPLGISKVDASSE
AIVIQFVPNPPIDPMKIITMIQSKRHIKMAGQDKLRIELKYGDLQQRVLAIRNFFNELK
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcgactccacccattcccgcccgcgctattcgaacctgcaaggttcgtccgat
gccttggctttggcgcaatacgctgcgcagctggcgccgccgggcaaaacgccgctcgtc
atcatcgccgccaacgcattggaagcgcagcggctggtggaagaaatcccgttcttcggt
cccgggctgcgcgtgcatctgctgccggactgggaaacgctgccatacgaccacttctcg
ccgcaccaggatctggtctccgaacggctcgccacattgcaccatatccgcagcaatgcc
agcgatgtcgtcatcgtaccgatcaccaccgcgctgtatccgctgccgccggtcgaacac
ctggccgcctacaccttcttcctcaagcgcggcgagaagctgaacctggcgcaattgcgc
gagcagctcaccttcgccggctacaaccacgtgcagcaggtgctcacccccggcgagtac
tgcgtgcgcggcggcatcatcgacctgttcgccatgggcagcgtgctgccttaccgcatc
gacctgttcggcgacgagatcgaaaccatcgccaccttcgacgtcgacacccagcgcacc
ctgtatccggtgccggaaatccgcctgctgcccgcgcgcgaattcccgatggacgaaaaa
ggccaggccaccttccgccagaatttccgcgaccgtttcgagggcgacccgtccaagtcg
cgcatctacaaggatgtcagcaagggcatcgcccccgcgggcatcgaatattacctgccg
ctgtttttccacaagaccgccacgctgttcgattacctgccgaagaacgccacgctgtgc
ctgcaccacgacgtggacgaagccatcgccaccttcggcaaggatgccgcctcgcgctac
aacctgctgcgcggcgatccgcagcgcccgttgctggagaccaaggaattgttcctcgat
gcggagcagttcttcatccgggtgaaggagtttgcacggctggacatcgtcaccaatgag
gctggtgcgacactgacagcctgccccaccgccgccatcccccccatcgccgtggaccgc
cgtgccgaagtccccacgcagaagttcgaagacttcctgcgcggctaccaaggccgcgtg
ctgctgctcgccgacagcctcggccgccgcgagatcatgtccggctacctgagggaatac
ggcctcatcccgtcggtgtgcgaggactacgcctcgttcctcgccggacaggacaaattc
atgctcggtgtcggtccggtgcaattcggtttcgcgctgcccgatgacaacatcgccatc
gttaccgaaaccgagctgtatgccgcgcaacccagaaatcgtgccgcccgcgccacgaag
aaaagcaacgtcgagggcatgctgcgcgacctgtccgagctcaaaccgggcgacccggtg
gtgcacgagcagcacggcatcgcgcgctaccagggcctggtgaacctcgacctcggcgag
ggcgagaacgaattcctgctgctggaatatgccggcgaggacaagctgtatgtgccggta
tcgcagctgcatgtgatcagccgctacagcgggggggcgcccgaggccgcaccgctgcac
aagctgggcagcggtgcctgggacaaggccaagcgccgcgccatgcagcaggtgcgcgac
actgccgccgaactgctgaacctctatgcccagcgtgccacgcgcaagggccacgcgttc
aagttcacctatcacgactacgaagcgttcgccgccggcttcggcttcgaggagaccgcc
gaccaggctgccgccatcgaggcggtgctgctcgacctgcaatcgggcaagccgatggac
cggctgatctgcggcgatgtcggtttcggcaagaccgaggtcgcgctgcgtgcggccttc
gtcgcggccagcgaagggaaacaggtcgccgtgctggtacccaccacgctgctggccgag
cagcatttccagaatttctccaaccgcttcgccgactggccgatcaagatcgccgaactg
tcgcgcttccgctccagcaaggaaacgacgcaggccctgcaaggcctggccgaaggcaag
atcgacatcatcatcggcacgcacaagctgatccagaaggacgtgaaattccacaacctc
ggtctggtgatcctcgacgaggagcatcgcttcggcgtgcagcagaaggaacgcctgaag
gcgctgcgcgccgaggtggacgtgctgacgctcaccgccacgccgatcccgcgcacgctg
gcgatgtcgctggaaggcctgcgcgacttctcggtgatcgccaccgcgccgcaacgccgc
ctgtcgatcaagaccttcgtcagcaacttcagccagggcgtgatccgcgaagcggtgctg
cgcgaactcaagcgcggcggccaggtgtacttcctgcacaacgaagtcgacaccatgccc
aacatgctggagaagctggagacgctgctgccggaagcacgcatccgcatggcgcacggc
cagatgaacgaacgcgaactggaagcggtgatgcgcgacttccaccaccagcgcttcaac
ctgctgctgtgctcgaccatcatcgagaccggcatcgacgtgcccaccgccaacaccatc
atcatgaaccgcgccgaccgcttcggcctggctcaattgcaccagctgcgcggacgcgtc
ggccgttcgcaccatcaggcttatgcctacctgctggtagacagcatggacggcctcacc
gcacaggcaaaaaaacggctggaagcgatccaggcgatggagcagctgggcagcggtttc
ttcctcgccatgcacgacctcgagatccgcggcgcgggcgaagtgctgggcgaatcgcaa
agcggcgagatgcaggaaatcggtttcagtctctacaacgacatgctcaacgccgcgatc
aagtcgctcaaggcgggtcacgagccggacatggcgcacccgctgggcgtcaccaccgag
atcaacctgcacacgccggcgctgctgccgaacgactactgcggcgacatccaccagcgc
ctggtcatctacaaacggctggcgaactgcgacacccagcaagacctcgacgacatgcag
caggaactcatcgaccgcttcggcctgctgcccgcccccgcgcagaccctgctcgacagc
catcgcctgcgcatcctggcgaagccgctcggcatcagcaaggtggatgcctcctccgag
gccatcgtcatccagttcgtgcccaacccgccgatcgatccgatgaagatcatcaccatg
atccagagcaagcggcacatcaagatggcgggacaggacaagctgcgcatcgagttaaaa
tacggcgacctgcagcagcgggtactcgccatcagaaattttttcaacgaattgaagtga
DBGET
integrated database retrieval system
