Sideroxyarcus emersonii: MIZ01_1996
Help
Entry
MIZ01_1996 CDS
T08108
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
seme
Sideroxyarcus emersonii
Pathway
seme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIZ01_1996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seme03019
]
MIZ01_1996
Enzymes [BR:
seme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MIZ01_1996
Messenger RNA biogenesis [BR:
seme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MIZ01_1996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
P-loop_SecA
Cas3-like_C_2
Shikimate_DH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCK88195
UniProt:
A0AAN2BZI0
LinkDB
All DBs
Position
complement(2033714..2035078)
Genome browser
AA seq
454 aa
AA seq
DB search
MNNVSFTDLKLSPEILKALAEAGYTTPTPIQAQAIPAVLEGHDLMAGAQTGTGKTAAFAL
PMLQKLLPHASSSTSPARHPVRALILVPTRELAIQVEENIKTYARHTHLRSLVVFGGVDI
KQQTPHLKAGVEILVATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRILA
LLPRQRQSLMFSATFSSEIKKLSEDFMNYPTLIEVARSNASAENITQKVYLVEQANKHQL
LAKLLQGDDAKQVIVFTKTKLTASRLARELQREGVSADAIHGDKSQLERMQVLESFKQGK
VSVLIATDVAARGLDIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEK
YLLEIEKLIKTEIQKERVSSPGPGAKTHRAQRGEASEHRREYHASAPKKPSHDPWFDKPY
EPSVSAAPPAKKAVEPPAGKPKAQIPALFVRRSG
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
ttgaataacgtcagttttaccgatctgaagctgtctccagagatcctcaaggcgctggcc
gaagccggctacaccactcccaccccgatccaggcacaagccatcccggccgtgctggag
ggccatgacctgatggcaggggcgcagacgggaacgggcaagacggctgcatttgcgctg
ccgatgctgcagaagctgttgccgcacgccagttccagcacctcgcccgccaggcatccg
gtgcgggcgctgatcctggtgccgacgcgcgaactggcgatccaggtcgaggagaacatc
aagacctacgccaggcatacacacctgcgctcgctggtggtgttcggcggggtggacatc
aagcaacagacgccgcacctgaaggcgggggtggagatactggtggcgacaccgggacgc
ttgctggaccatatcgagcagaagacggtcttgctgaaccaggtgcagatgctggtgctg
gacgaggccgaccgcatgctggacatgggcttcatgccggcgctgaagcgcatcctggcg
ctgttgccgaggcagcggcaaagcctgatgttctccgcgaccttctcgagcgagatcaag
aagctttccgaagatttcatgaattacccgacgttgatcgaggtggcgcggagcaatgcc
tctgccgagaacatcacgcagaaggtctacctggtcgaacaggcgaacaagcatcaattg
ctggccaagctgttgcagggcgacgatgcgaaacaggtcatcgtcttcaccaagaccaag
ctgacggccagccgcctggccagggaattgcagcgcgaaggcgtatccgcggatgccatc
cacggcgacaagagccagctggagcgcatgcaggtgctggaatccttcaagcaaggcaag
gtctccgtactgatcgccaccgatgtggcggcgcggggactggatatcgacagtttgccg
atggtcatcaactacgagataccgcatgcggcagaagactatgtgcatcgcatcggccgc
accggccgtgcaggcgcatccggtaccgcgatctcgctggtgtcgccggaagaggaaaag
tacctgctggagatcgagaaactgatcaagacggagatccagaaggagcgcgtaagctca
ccgggaccgggtgcgaaaacgcaccgtgcccagcgcggcgaagcatccgaacacaggcgc
gaatatcacgcttccgcaccgaagaagcccagccatgatccctggttcgacaagccttac
gaaccgagcgtcagcgctgcaccgccggcaaagaaagcggtcgagccgccggcaggcaaa
cccaaggcgcagatccccgcgttattcgtgcgcaggtcgggctga
DBGET
integrated database retrieval system
