Sideroxyarcus emersonii: MIZ01_2074
Help
Entry
MIZ01_2074 CDS
T08108
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
seme
Sideroxyarcus emersonii
Pathway
seme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIZ01_2074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seme03019
]
MIZ01_2074
Enzymes [BR:
seme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MIZ01_2074
Messenger RNA biogenesis [BR:
seme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MIZ01_2074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
AAA_22
DEDD_Tnp_IS110
Sacchrp_dh_NADP
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCK88272
UniProt:
A0AAN1XB50
LinkDB
All DBs
Position
complement(2095706..2097055)
Genome browser
AA seq
449 aa
AA seq
DB search
MSFASLGLSEEIVRAVSERGYTEPTPIQAQAIPVILQGGDLMGGAQTGTGKTAGFTLPLL
QRLMSKPVAGKAHIRALVLTPTRELAAQVEESVREYGKYLPLKSMMMFGGVNINPQIKQL
HGRVDILVATPGRLLDHLQQKTVDLSHVEILVLDEADRMLDMGFIRDIKRVLAVLPKQRQ
NLLFSATFSDEIKLLADGLLNNPALIEVARRNAANELIEQRVYPVDRERKRELLTHLIKE
HNWFQVLVFTRTKHGANRLAEQLDKSGIPAMAIHGNKSQAARTRALAEFKTAKLQVLVAT
DIAARGIDISELPHVVNFELPNVPEDYVHRIGRTGRAGSNGEASSLVCIDEKKLLHDIER
LIKREIPVVNVPGFDVDPTIKAEPIINGQNRGQGGRGQGRGQSAPRSAGGQPRTGGTPRT
GGGKPAGGFSAGRGGAPSSAQHRSGGRGR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcatccctcggcctgtccgaagaaatcgtccgcgccgtttccgagcgcggc
tataccgagcccacgcccatccaggcacaggccatccccgtcattttgcaaggcggcgac
ctgatgggcggcgcgcagaccggtaccggcaagaccgccggattcacactgccgttgctg
caacgcctcatgtccaagccggttgccggcaaggcgcacatccgcgcgttggtacttacg
ccgacacgcgagctcgccgcacaggtggaagagagtgtgcgcgaatacggcaaatatctg
ccgctcaaatccatgatgatgttcggcggcgtcaacatcaatccgcagatcaagcagctg
catggccgtgtcgacatcctggtggcgacacccgggcgcctgctcgaccacctgcagcaa
aaaaccgtggacctgtcgcatgtcgagatcctggtgctggacgaggccgaccgcatgctg
gacatgggcttcatccgcgacatcaagcgcgtgctggcagtgttgccgaagcaacgccag
aacctgctgttctccgccaccttctccgacgagatcaagctgctggccgatggcctgctg
aacaacccggcgctgattgaagtggcgcgacgcaatgcggcgaacgaattgatcgaacag
cgcgtgtatccggtcgaccgtgaacgcaagcgcgaactgttgacgcatctcatcaaggag
cacaactggttccaggtgctggtgttcacccgtaccaagcacggtgcaaaccggctggcc
gagcagctcgacaagagcggcatcccggcgatggcgatccatggcaacaagagccaggcc
gcgcgtacgcgggcactggccgagttcaagaccgccaagctgcaggtgctggtggccacc
gacatcgccgcgcgcggcatcgacatcagcgaactgccgcatgtggtcaacttcgaattg
cccaacgtgccggaagactacgtgcaccgcatcggacgtaccggccgtgccggcagtaac
ggcgaggcgagctcgctggtatgcatcgacgagaagaaattgctgcatgacatcgagcgc
ttgatcaagcgagagatcccggtggtgaacgtgccgggcttcgatgtcgatccgaccatc
aaggccgagccgatcatcaacggccagaatcgcggtcagggtggacgcgggcaaggtcgc
ggacaatccgcgccgcgcagcgctggcggacagccccgcaccggtggcacaccgcgcacg
ggcggcggcaaaccggcgggcggattctctgccggtcgtggcggcgcgccgtcctccgca
cagcatcgctccggcgggcgcggccgatga
DBGET
integrated database retrieval system
