Saccharopolyspora erythraea: SACE_0826
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Entry
SACE_0826 CDS
T00492
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sen
Saccharopolyspora erythraea
Pathway
sen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SACE_0826 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sen03400
]
SACE_0826 (mfd)
Enzymes [BR:
sen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SACE_0826 (mfd)
DNA repair and recombination proteins [BR:
sen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SACE_0826 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAM00166
Kitasato:
SACE_0826
Cambridge:
SACE_0826
UniProt:
A4F7Z2
LinkDB
All DBs
Position
923978..927565
Genome browser
AA seq
1195 aa
AA seq
DB search
MSQAGPLRGLLETMLRDSAVRQVVEAVDRPRLVLEGPAAARPLAAAALAAADRPVLLVTA
TGREAEEVAAAVSDLIGSDGVEVFPSWETLPHERLSPRADTVGRRLAVLRRLAHPEEHDH
GRIRVLVTTVRSLIQPIAPGLGELAPVRLRVGDEHDFEELVEKLAALAYNRVDMVEKRGE
FAVRGGIVDVFPPTEEHPLRVEFWGDEVTEVRPFSVADQRSLPEAQDTTLFAPACRELLI
TEQVQERAAKLAEQHEADAHLNEMLGKIAGGAPVEGMEALIPALCEGEMRLLTDLVPGGT
HVVVADPEKVRARAADLVRTGQEFLEASWMVAADGGRAPIDLGASAYRGLAEVAAHTEST
GLPWWTLTQLSSEDTEDDDGVVRLALKQVDAYRGEVERAFADLRAHTTAGGAAVLVVAGA
GTAQRAVQQLREGELPARLAEDGLTAEPEPGVVTVARGGLEDGFAAPEVALVVLTEADLT
GGRGGTSTKDMRRMPSRRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTVGGATREYLV
LEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKEIAA
ELVQLYAARQSAPGHAFGADTPWQRELEDAFPYTETGDQLAAIDEVKADMQRAVPMDRVI
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTDRMRSFPVTVKGLSRF
TDPLESEQTTTGLAEGTVDVVIGTHRLLQTGVRYKDLGLVIVDEEQRFGVEHKEHIKALR
THVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYDEKQVAAAIRREL
LRDGQVFFVHNRVQTIEKAARHLRELVPEARIVTAHGQMNEDRLEKIIQGFWEREHDVLV
CTTIVETGLDISNANTLIVERSDVLGLSQLHQLRGRVGRARERGYAYFLYPEEKPLTDTA
HDRLATIAQNSELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAF
RRHAGAEPGAGEEELPEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAAGDTEALDAVRA
ELTDRYGSLPEPVERLLKVAAFRQLCRAHGVTEVTQQGTSLRAAPLELADSQLVRLKRLY
PKAVYKAAVRTVSVPRPTEGAAGGRIGAPPLRDEALLDWCAKLLESLAGRPAPVG
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggccggtcccctgcgcggactgctcgaaaccatgctgcgcgacagcgccgtc
cggcaggtcgtcgaggccgtggaccggccgcgcctggtgctggagggtccggcggccgcc
cgcccgctggccgccgccgcgctggccgccgccgaccgcccggtgctgctggtgaccgcg
accggccgggaggccgaggaggtcgccgccgcggtgtcggacctcatcggctccgacggc
gtggaggtcttcccgtcgtgggagacgctgccgcacgagcggctctccccgcgcgccgac
accgtcggccgcaggctcgccgtgctgcgcaggctcgcccaccccgaggagcacgatcac
ggccggatcagggtgctcgtcacgacggtgcgcagcctcatccagccgatcgcgcccggg
ctgggcgagctggcgccggtgcggctgcgcgtcggcgacgagcacgacttcgaggaactg
gtcgagaagctggcggcgctggcctacaaccgggtcgacatggtcgagaagcgcggcgag
ttcgcggtgcgcggcggcatcgtcgacgtcttcccgcccaccgaggagcacccgctgcgg
gtggagttctggggcgacgaggtcaccgaggtccgcccgttctccgtcgccgaccagcgg
tcgctgcccgaagcgcaggacaccaccctgttcgcccccgcctgccgcgagctgctgatc
accgagcaggtgcaggagcgcgcggccaagctcgccgagcagcacgaggccgacgcgcac
ctcaacgagatgctgggcaagatcgccggcggtgccccggttgagggcatggaggcgctg
atccccgcgctgtgcgagggggagatgcggctgctgaccgacctggtcccgggcggcacg
cacgtcgtggtcgccgacccggagaaggtgcgggcgcgggcggcggacctggtgcgcacc
ggccaggagttcctggaggcgtcgtggatggtcgccgccgacggcggcagggcgcccatc
gacctcggcgcctcggcctaccgcggcctggccgaggtcgccgcgcacaccgagtcgacc
ggcttgccgtggtggacgctgacgcagctcagcagcgaggacaccgaggacgacgacgga
gtcgtccggctcgccctcaagcaggtcgacgcctaccgcggcgaggtggaacgggccttc
gccgacctgcgcgcgcacaccaccgccggcggcgcggcggtgctggtcgtggcgggcgcg
ggcaccgcgcagcgcgcggtgcagcagctccgcgagggcgagctgcccgcccggctggcc
gaggacgggctcaccgcagaacccgagcccggcgtggtcacggtcgcccgcggcggcctg
gaggacggcttcgccgcgcccgaggtcgcgctcgtggtgctcaccgaggccgacctgacc
ggcgggcgcggcggcacctccaccaaggacatgcgccggatgccgtcgcggcgccgcaac
gccgtcgacccgctcgcgctgaaggccggcgacttcgtcgtccacgagcagcacggcatc
ggcaagtacgtcgagatggtgcagcgcaccgtcggcggcgccacccgcgagtacctggtg
ctggagtacgccagcagcaagcgcggccagcccggcgaccggctgttcgtgcccaccgac
cagctcgacgaggtctcccgctacgtcggcggcgagctgcccacgctgaacaagctcggc
ggctcggactggaagaacaccaaggccaaggcgcgcaaggcggtcaaggagatcgccgcc
gagctggtgcagctctacgccgcccgccagtcggcccccggccacgccttcggcgccgac
accccgtggcagcgggagctggaggacgccttcccctacaccgagaccggcgaccagctc
gccgccatcgacgaggtcaaggccgacatgcagcgcgcggtgcccatggaccgggtgatc
tgcggcgacgtcggctacggcaagaccgagatcgccgtgcgcgcggcgttcaaggcggtg
caggacggcaagcaggtcgcggtgctggtgcccacgaccctgctcgcccagcagcacctc
aacaccttcaccgaccggatgcgctcgttcccggtgacggtcaagggcctgtcgcgcttc
accgacccgctggagtccgagcagaccaccaccggcctggccgaggggaccgtcgacgtc
gtcatcggcacccaccggctgctgcagaccggcgtccgctacaaggacctcgggctggtc
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcacatcaaggccctgcgc
acgcacgtcgacgtgctgaccatgtcggcgacgccgatcccgcggacgctggagatgagc
atggccggcatccgcgagatgtcgaccatcctcaccccgcccgaggagcgccacccggtg
ctgacctacgtcggcgcctacgacgagaagcaggtcgcggcggcgatccggcgcgagctg
ctgcgcgacggccaggtcttcttcgtgcacaaccgggtgcagaccatcgagaaggccgcg
cggcacctgcgcgagctcgttccggaggcgcggatcgtcaccgcgcacgggcagatgaac
gaggaccggctggagaagatcatccagggcttctgggagcgcgagcacgacgtgctcgtg
tgcaccacgatcgtggagaccggcctggacatctccaacgccaacaccctgatcgtggaa
cgctccgacgtgctgggcctctcgcagctgcaccagctgcgcggccgggtcggacgcgcc
cgcgagcgcggctacgcctacttcctgtacccggaggagaagccgctgaccgacaccgcg
cacgaccggctggccaccatcgcgcagaactccgagctgggcgcgggcatggcggtggcg
atgaaggacctggagatccggggcgcgggcaacatcctcggcgcggagcagtccggccac
atcgcgggcgtcggcttcgacctctacgtgcggctggtcggcgaggccgtcgaggcgttc
cgcaggcacgccggggccgagcccggggcgggcgaggaggagctgccggaggtgcgggtc
gacctgccggtggacgcccacatcccgcacgactacgtgccgggggagcggctgcggctg
gaggcctaccgcaagatcgccgcggcgggcgacaccgaggccctcgacgcggtgcgggcc
gagctcaccgaccgctacggttccctgcccgagccggtcgagcgcctgctcaaggtcgcg
gcgttccgccagctgtgccgcgcgcacggggtcacggaggtgacccagcagggcacgtcg
ctgcgggcggcgccgctggaactggccgactcgcagctcgtccggctcaagcggctgtat
cccaaggcggtgtacaaggccgcggtgcgcaccgtctcggtgccgcggccgaccgagggc
gccgcgggcggccggatcggcgcgccgccgctgcgcgacgaagcgctgctggactggtgc
gcgaagctgctcgagtcgctggccgggcgcccggcgccggtgggctag
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integrated database retrieval system
