Saccharopolyspora erythraea: SACE_5898
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Entry
SACE_5898 CDS
T00492
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sen
Saccharopolyspora erythraea
Pathway
sen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SACE_5898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sen03019
]
SACE_5898
Messenger RNA biogenesis [BR:
sen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SACE_5898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CAM05081
Kitasato:
SACE_5898
Cambridge:
SACE_5898
UniProt:
A4FM06
LinkDB
All DBs
Position
complement(6620919..6622643)
Genome browser
AA seq
574 aa
AA seq
DB search
MSAKATATEYHPVTPTSSAPPGPLAEGGLRVFALGGIGEVGRNMTVFEHAGRLLVVDCGV
LFPEDDAPGVDLILPDFAPIENRLDDIEALVLTHGHEDHIGAVPFLLRLRPDLPVVGSKF
TLALLAAKCKEHRLSPTLVEVAEGQHSTHGAFDLEFFAVNHSIPDALAVAIRTPAGVVLH
TGDIKLDQLPLDGRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIRPVLDRVIG
KATQRLIVACFASHVHRVQQVLDVAVEHGRKVCFVGRSMVRNMGIASELGLLQVPDGLIV
ELDEALAMPEHLVVFVSTGSQGEPLSALSRMARGEHKQIRIRAGDTVVLASSLIPGNETA
VFGVVNGLVRLGADVVHQGGAKVHVSGHASAGELLYLYNAVRPSNVMPVHGEWRHLRANG
ELARLTGVAPERVVIAEDGVVVDMVDGIADIVGRFEVGHVYVDGLSVGDVGESTLSDRLI
LGEGGFISINVAVEASTGRAVSSPKISGRGFSDDPKALDEVVPLVEMELARTESEGITDT
HRIAQAVRRVVGKWVADTYRRRPMIVPNVLPVGG
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgcgaaggccacagccaccgagtaccacccggtgacgccgacctcgtcggcaccg
ccgggaccgctggcagaaggcggcctgcgcgtgttcgcgctcggcggcatcggcgaggtc
ggccgcaacatgacggtgttcgagcacgccggccggctgctggtcgtcgactgcggggtg
ctgttcccggaggacgacgcgcccggggtggacctgatcctgcccgacttcgcgcccatc
gagaaccgcctcgacgacatcgaggcgctggtgctcacccacggccacgaggaccacatc
ggcgcggtgccgttcctgctgcgcctgcggcccgaccttccggtcgtgggctcgaagttc
acgctcgcgctgctggcggccaagtgcaaggagcaccggctcagcccgacgctggtcgag
gtcgccgagggccagcacagcacgcacggcgccttcgacctggagttcttcgcggtcaac
cactcgatcccggacgcgctggccgtcgccatccgcaccccggccggggtggtgctgcac
accggtgacatcaagctggaccagctcccgctggacggcaggctcaccgacctcgcgggc
ttctcccggctcggcgacgagggcgtggacctgttcctggtcgactccaccaacgccgag
gtgcccgggttcgtcaccccggagcgcgagatccggccggtgctggaccgggtcatagga
aaggccacccagcggctgatcgtggcgtgcttcgccagccacgtgcaccgggtgcagcag
gtgctcgacgtggccgtcgaacacggcaggaaggtctgcttcgtcggccgctcgatggtc
cgcaacatgggcatcgcctccgagctcggcctgctgcaggtgcccgacggcctgatcgtc
gagctcgacgaggcgctggcgatgcccgagcacctggtcgtgttcgtctcgaccggttcg
cagggcgagccgctgtcggcgctgtcgcggatggcccgcggcgagcacaagcagatccgc
atccgcgcgggcgacaccgtcgtgctggccagctcgctgatccccggcaacgagaccgcg
gtgttcggcgtggtaaacggcctggtccggctgggcgccgacgtcgtgcaccagggcggt
gcgaaggtccacgtctccggccacgcctcggcgggcgagctgctctacctctacaacgcg
gtccggccgagcaacgtgatgccggtgcacggcgagtggcggcacctgcgcgccaacggc
gagctggcgcggctgaccggcgtcgcgccggagcgggtggtcatcgccgaggacggcgtg
gtcgtcgacatggtcgacggcatcgccgacatcgtgggccgcttcgaggtcggccacgtc
tacgtcgacggcctgtcggtcggcgacgtcggcgagtcgacgctgtcggaccggctgatc
ctcggcgagggcgggttcatctcgatcaacgtcgccgtcgaggccagcaccgggcgcgcg
gtgtcgtcgccgaagatctccggtcgcgggttctccgacgaccccaaggcgctcgacgag
gtcgtgccgctggtggagatggagctggcgcgcaccgagtcggagggcatcaccgacacc
caccggatcgcgcaggccgtgcgccgcgtggtgggcaagtgggtcgccgacacctaccgg
cgccgcccgatgatcgtgccgaacgtgctgccggtaggcggctga
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