Salmonella enterica subsp. enterica serovar Bovismorbificans: BN855_25986
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Entry
BN855_25986 CDS
T02827
Symbol
shdA
Name
(GenBank) host colonisation factor (ShdA); flags fragments
Organism
senb
Salmonella enterica subsp. enterica serovar Bovismorbificans
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PATR
Autotransporter
AC_1
Motif
Other DBs
NCBI-ProteinID:
CDK12751
LinkDB
All DBs
Position
complement(join(2574679..2578002,2578110..2580467))
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AA seq
1893 aa
AA seq
DB search
MYVVASELARGHSKVKAQVCASEIHSLNKKSEYGQIIKATRAALACAVAAALGFFSPLAM
ADNQVSYADAQTHVLDASTPPMSYSGTDEGAALYVSGVATVGWQPTTVTGTGLVIETSGG
GADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYTQGISAADGSKLTLTDSTLTIDGN
FGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNTATD
EGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDITGGN
ITSAGTGVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVSDANVTSKTVAL
NIDGSTTINDPIELTNSTFTAPTAIKLGSKATIQAEKTMLTGNIVQTDASSSSLSLSQGS
TLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQ
DGSQINATLDTANSSPIIKAANVTLDGTLNLSSTATFVAPETDEHFGSITLIDSQSAITT
DFDSVTLDADTSAMPDYLTINAGVDADDNTNYELSTGLSWYAGANSARAAHGTFTVDAGS
TFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAASLGTG
DVTIAENATLALSQGTLDNNVTGGGQIVKSGSDELIVTGDNTYSGGTTITGGTLTADHAD
SLGSGDIDNSGVLKVGEGDLENTLSGSGSLVKTGTGELTLSGGNDYSGGTTIIGGTLTAD
HADSLGTMRIRWAAATIANNGVLKVGEGDLENTLSGSGSLVKTGTGELTLSGGNDYSGGT
TIIGGTLTADHADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYS
GATTITDGTLIAANVNALGSGNIDNSGTLMLDAEGEFNLANVTTQSGATTELARGTTLNV
DSLTQQADSTLNIDLSKANGESAITADSVTLGGTLNVTGIGSVTDSWTPEAYTYTLIDSD
SAITSDFDDLTIAGMNREDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTF
TLSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTL
VAASTTALGTGLVDNNATLVLDADGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQQD
GSTLNVELNSDSVQPLITGSSATLGGDLVVSDASLQARASDAEFQSFKLMDMTSDISGDF
TSLTMNLTDKPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGAGDSFEV
TSVLGDKTGNGDWDGKTLTKLGAGKLTLSGVNTYSGDTNVQEGTLWLSGDGSIGEMGSQQ
AVNVASGATFGGSNGTTVNGKVTNEGTLVFGDSEETGAIFTLNGDLVNMGTIASGSTSST
PDNTLYVDGNYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGIGDGAQTTNG
IEVVDVGGVSTSDAFVLKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDDSGGDDTPSD
GGDDGGNVTPPDDGGDVAPQYRADIGAYMGNQWMARNLQMQTLYDREGSQYRNADGSVWA
RFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAWGNGQQSVTVGVMASYINADTDSTGNR
GADGSQFTSSGNVDGYNLGVYATWFADAQTHSGAYVDSWYQYGFYNNSVESGDAGSESYD
STANAVSLETGYRYDIALSNGNTVSLTPQAQVVWQNYSADSVKDNYGTRIDGQDGDSWTT
RLGLRVDGKLYKGSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELKVGLQAD
IDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW
NT seq
5682 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtcgtggcttcagaactggcgcgaggccacagcaaagttaaagcgcaagtatgc
gcgagtgaaatccattccctaaacaaaaagtccgaatatggacaaataataaaagcaacg
cgcgcggcgctggcttgcgccgtggctgcagcgctcggatttttcagcccgctggccatg
gccgacaatcaggtatcatatgctgatgcgcagacccacgttctggatgcgtcaacgccg
ccgatgagctattcgggcaccgatgaaggcgcggcgctatatgtctcgggtgtcgccacc
gtcggctggcagcccaccacggtcacagggacggggctcgtcattgaaacaagcggaggc
ggggctgatgatccggatggcggtaagtatgtttccaacgccatttcgctggatcattac
gctatccttgagcttaccgacgcgaagataaccactacgggtatttatacccagggtatt
tccgcagcggatggcagcaaactgacgttaacagacagtacgctaacgattgacggcaat
ttcggcgtaatgacgttgtatacgggttcagaagcaacgctggacggtaccatcgttgag
gcagctaacagcagcagcgcgcaggtgcaacaaggcagtacgctgaacgtgctggacggt
agcacaatcaccctggcgcaaggccagataaacgttgttgccggaaacaccgcgacagac
gagggttccaccctgaacctgtctgatagctcggtcagctctgcaggtacgatgagcacc
atccagggtaccaataaggccgctcttaatctcaccaacgcgaccataacacataccaat
gccagcggcgcggcggtacaggccaataacgccactaccctggatattacaggcggcaac
attacctctgccggtacgggtgtgtatattctggcgtcggacgccaggatcgacggcgcc
accatcaacgccgacggcgacggtatctttataaccagcaaaagaaaactcgacgggtat
gaggatctcaacgcgctgacggtcagcgacgcaaacgtcacctcaaaaactgtcgcactg
aacattgatggcagcacgaccattaacgaccccattgagctcaccaacagcacctttacg
gcgccgaccgcgatcaaattaggcagcaaagcgactattcaggccgaaaaaacgatgctg
accggcaacattgtccagactgacgcgtcatcgtcatcgctctctttaagccaggggtcc
acgttaaccggtagtgtagatgcgatgtttactacgctgtcgctcgacgacaccagccag
tggaacatgaccgacccgtcaaccgtcggcaatctgaccaacgacggcgatattacgctg
ggcaacgcgagcggttcgacaggtacgctgctgacggtggacaataccctgaccttgcag
gacggcagccagataaacgcgacgctggataccgccaacagctcgccaattatcaaagcc
gccaacgtcacgctggacgggacgctgaaccttagctcaacggccacctttgtcgcgccc
gaaaccgacgaacactttggatcgatcacgctgattgattcgcaaagcgcaatcactacc
gattttgacagcgtaacactggatgctgacacctccgctatgccggattatctgacgatc
aacgcgggcgttgatgcggatgataataccaactacgagttgtctacgggcttgagttgg
tacgcgggcgcaaattctgcgcgcgctgcgcatggcacttttaccgttgatgcaggcagt
acctttaccgtcaccagcgaactggacgaaaccacggcgacctccaactggaacggcagc
aagctaaccaaacaaggcgacggcacgctgatcctcagcaacaccggcaacgactacggc
gatactgaaattgacggcggcattctggccgccaaagacgccgcctcgctcggcactggc
gatgtgacgattgcagaaaacgcaacgcttgcgctgagccagggcacgctggataacaac
gtgaccggcgggggccaaattgtcaaaagcggtagcgatgagctgatcgtaaccggcgat
aacacttactccggcggcaccaccattaccggcggtacgctgacggctgaccatgcggat
tcgctgggcagcggcgatatcgataacagcggcgtgcttaaggtgggcgaaggcgatctg
gaaaatacgctttccggcagcggttcgctggtgaaaaccggtaccggcgagctgacgtta
agcggcggcaacgattactccggcggcaccaccattatcggcggtacgctgacggctgac
catgcggattcgctgggtaccatgcggattcgctgggcagcggcgactattgccaacaac
ggcgtgcttaaggtgggcgaaggcgatctggaaaatacgctttccggcagcggttcgctg
gtgaaaaccggtaccggcgagctgacgttaagcggcggcaacgattactccggcggcacc
accattatcggcggtacgctgacggctgaccatgcggattcgctgggtaccggcgctgtt
gccaacagcggcgtgcttcaggtcggcgagggcgagctggaaaatacgctttccggcagc
ggttcgctggtgaaaaccggtacgggcgagctgacgttaagcggcgacaacagctattcc
ggcgccaccactatcactgacggcacgctgattgccgccaacgtcaacgcgctgggcagc
ggcaatatcgacaacagcggtacgctgatgctggacgcggagggcgaattcaaccttgcg
aatgtcacgacccagtctggagcaacgactgagctggccagaggtacgacgctcaacgtc
gactcgctgactcagcaagccgatagtacgctgaatattgacctcagtaaggccaacggt
gaaagcgccattaccgccgacagcgtcacgctgggcggcactctgaatgttaccggcatc
ggcagcgttacagacagctggacgcctgaggcatacacctatacgctgattgacagcgac
agcgccattacgagcgatttcgacgatctgaccattgcagggatgaaccgcgaagatgtt
gactttctgactatcgacggaaaagtcgatgaagcagacaacacccactatgatctgacg
gcctccctctcctggtatgcggacagagacaacgccactaccgacgcccacggcaccttt
accctgagcgaccctgacggcagctttaacgttgcggctacactgacagacgttgacgat
acgctggatccgggtagcagatgggacggtaaatcgctgaccaaagaaggcgcaggcacg
ctgatcctctctggcgacaacgactacagcggcggcaccaccatcaatgaaggtacgctg
gtcgccgccagtacgacggcgctgggcaccggtctggtagacaataatgccacgctggtg
ctggacgcagacggtgaagtcagcgcggtgggcggcatcaccactcatagcggcgcgacg
acccaactggcgctcggcacctcgttggatctcggcgacagcgcgttaattcagcaagat
ggcagtacgctgaacgttgagctgaatagtgactcagtgcaaccgctgattaccggcagc
agcgccacgcttggcggcgatttggtcgtcagcgacgccagcctgcaagcgcgcgcctcc
gacgcggagttccagtcctttaaactgatggatatgaccagcgatatcagcggcgacttt
accagcctgacgatgaacctcactgacaagccggactatctgaccgtaaccgggacaatc
aatcctgaagatgcgtcagaatatctgcttaccgaagggctgagctggaatgcgaccgcc
acgtcagcgacgccagcacacggcaccttcactctgggcgcaggcgatagctttgaagtc
accagcgtactgggcgataaaaccggcaacggcgactgggatggtaaaacgttgaccaaa
ctgggcgcgggtaaactgacgctgagcggcgtgaacacctatagcggcgataccaacgta
caggaaggcacgctatggctgtccggagacggctcgattggcgagatgggcagccagcag
gcggtgaacgtcgcctccggggcgaccttcggcggcagcaacggtacgaccgttaacggt
aaggtgaccaacgaagggacgctggtctttggcgacagcgaggaaacaggcgccatcttc
accctcaatggcgatctggtcaacatggggacgatcgccagcggcagcacctccagcacg
ccggacaatacgctttatgttgatggcaattacaccggcaacggcggctcgctttatctg
aataccgtcctgggcgacgatgattcggcgaccgataagctggtgattaccggcgatgcc
tccggcaccaccgatctgtacatcaacggcatcggcgatggagcacagaccactaacggt
attgaagtggtggatgttggcggcgtatcgaccagcgatgcgtttgtgttaaaaaatgaa
gttaacgccggtctgtatacctaccgtctgtactggaatgaaagtgacaacgactggtat
ctggcgtcaaaagcacagtctgatgatgacgacagcggcggtgatgacacgccttcggat
ggcggtgacgatggcggtaatgtcacgcctccggacgacggcggcgatgtcgcaccgcag
taccgtgcggatatcggcgcgtacatgggcaaccagtggatggcgcgcaacctgcaaatg
cagaccctctatgaccgcgagggcagccagtatcgtaacgcagatggcagcgtatgggcg
cgcttcaaagcgggtaaagcggaatccgaggctgtcagcggcaatatcgatatggacagc
aactactcccagttccagttaggcggcgacattctggcctggggcaacggccagcagagc
gttaccgttggcgtcatggcgagctacatcaacgccgataccgacagtaccggtaaccgt
ggcgcggacggtagccagttcaccagtagcggcaacgtagacggctataaccttggcgtc
tatgccacctggtttgccgatgcccaaacgcatagcggcgcgtatgtcgacagctggtac
caatatggtttctacaacaacagcgtagagagcggtgatgcgggatctgaatcttatgat
tcaaccgctaacgccgtctcgctggaaactggttatcgctacgatattgcgcttagcaac
ggtaatactgtcagtctgacgccgcaggcgcaggttgtctggcagaactactcagcggat
agcgtgaaggataactacggcacccggatcgacggtcaggatggcgacagttggacaacg
cgcctgggtctgcgtgttgacggcaagctgtacaaaggcagccgtacggttatccagccg
tttgctgaagctaactggctgcacaccagcgatgatgtgtcggtatcgtttgatgatgct
acggtgaaacaggatcttccggctaaccgtgcggagctgaaagtgggtctgcaggcagat
atcgataagcagtggagcgttcgcgctcaggttgccgggcagactggcagcaatgacttt
ggcgatctgaacggtagcctcaatctgcgctataactggtaa
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integrated database retrieval system
