Salmonella enterica subsp. enterica serovar Tennessee: SEET0819_01185
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Entry
SEET0819_01185 CDS
T03730
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
senc
Salmonella enterica subsp. enterica serovar Tennessee
Brite
KEGG Orthology (KO) [BR:
senc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
senc03016
]
SEET0819_01185
Enzymes [BR:
senc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SEET0819_01185
Transfer RNA biogenesis [BR:
senc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SEET0819_01185
Prokaryotic type
tRNA splicing ligases
SEET0819_01185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AHN77872
LinkDB
All DBs
Position
complement(231052..232266)
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AA seq
404 aa
AA seq
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MNYELMTTQNVPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGCTTGRGHRDV
GAWGKPPANVDEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDRV
WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQ
QFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSA
RRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHV
ECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattgatgaccacccagaacgtaccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcccgtcagcagctgatcaatacggcgaaaatgccgtttattttc
aaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagcgtg
atcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtggaatg
aacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggaactgcgt
agcgccatagaggccgctgtgcctcacgggtgtaccaccgggcgcgggcatcgcgatgtg
ggcgcatggggaaaaccgcccgccaacgttgatgaaaaatgggcgcagctggaagcggga
tatcagtggttaacgcaaaaatatccgcgctttttgaataccaataactataagcacctg
ggaacattgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgggta
tggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctattttatc
ggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctggcg
tattttaatgaaggaagcgaatattttgatgattacctgaaagcggtacactgggcgcag
caattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccagcgc
tgcgtggaaaaaccgatcgccctcgatatggacgagatcaactgccaccataactatgtg
caaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggctgtttcggcg
cggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtgcgc
gggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccggacgtgtgatgagc
cgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcatgtc
gaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatattgat
gcggtgatggcggcgcagtctgacctggtggaaatcatgtacgccctgcggcaggtggtg
tgcgttaaaggatag
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