Salmonella enterica subsp. enterica serovar Typhimurium DT104: DT104_25651
Help
Entry
DT104_25651 CDS
T02874
Symbol
shdA
Name
(GenBank) host colonisation factor (ShdA)
Organism
send
Salmonella enterica subsp. enterica serovar Typhimurium DT104
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PATR
Autotransporter
AC_1
ESPR
Motif
Other DBs
NCBI-ProteinID:
CCW75266
LinkDB
All DBs
Position
complement(2695780..2701899)
Genome browser
AA seq
2039 aa
AA seq
DB search
MRNMYVVASELARGHSKVKAQVCASETHSPNQKSEYGQIIKATRAALACAVAAALGFFSP
LAMADNQVSYADAQPHVLDASTPPISYSGTDEGAALYVSGVATVGWQPTTVTGTGLVIET
SGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYTQGISAADGSTLRLTDSTLTI
DGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTLNVLDGSTITLAQGQINVVAGNT
ATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTNATITHTNASGAAVQANNATTLDIT
GGNITSAGTGVYILASDARIDGATINADGDGIFITSKRKLDGYEDLNALTVSDANVTSKT
VALNIDGSTTINDPIELTNSTFTAPTAIKLGSKATIQAEKTMLTGNIVQTDASSSSLSLS
QGSTLTGSVDAMFTTLSLDDTSQWNMTDPSTVGNLTNDGDITLGNASGSTGTLLTVDNTL
TLQDGSQINATLDTANSAPIIKAANVTLDGTLNLSSTATFVAPETDEHFGSITLIDSQTA
ITTDFDSVTLDADTSAMPDYLTINAGVDANDNTNYELSTGLSWYAGANSARAAHGTFTVD
AGSTFTVTSELDETTATSNWNGSKLTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAAL
GTGDVTIAESATLALSQGTLDNNVTGEGQIVKSGSDELIVTGDNNYSGGTTISGGTLTAD
HADSLGSGDIDNSGVLKVGEGELENILSGSGSLVKTGTGELTLSGDNTYSGGTTITGGTL
TADHADSLGSGDIDNSGVLKVGEGDLENTLSGSGSLVKTGTGELTLSGGNDYSGGTTIIG
GTLTADHADSLGTGAVANRGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYSGGTT
IIGGTLTADHADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYSG
GTTIIGGTLTADHADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLGGDNS
YSGATTITDGTLIAANVNALGSGNIDNSGTLILDANGAFELANVTTHSGATTALAAGSTL
DAGQFTQEDGSTLSIDLGAATDDAVITADSVALGGTLNVTGIGSVTDSWTPEAYTYTLIG
SDSAITTDFDDLTVAGMNREDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHG
TFTLSDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEG
TLVAASTTALGTGLVDNNATLVLDADGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQ
QDGSTLNVELNSDSVQPLITGSSATLGGDLVVSDASLQARASDAEFQSFKLMDMTSDISG
DFTSLTMNLTDKPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGAGDSF
EVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYSGDTNVQEGTLWLSGDGSIGEMGS
QQAVNVASGATFGGSNGTTVNGKVTNEGTLVFGNSEETGAIFTLNGDLINMGTMTSGSSS
STPGNTLYVDGNYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYINGIGDGAQTT
NGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQSDDDDSGGDDTP
SDGGDDGGNVTPPDDGGDGGNVTPPDDGGDGGDVTPPDHGGDVAPQYRADIGAYMGNQWM
ARNLQMQTLYDREGSQYRNADGSVWARFKAGKAESEAVSGNIDMDSNYSQFQLGGDILAW
GNGQQSVTVGVMASYINADTDSTGNRGADGSQFTSSGNVDGYNLGVYATWFADAQTHSGA
YVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRYDIALSNGNTVSLTPQAQVVW
QNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDGKLYKGSRTVIQPFAEANWLHTSDDVS
VSFDDATVKQDLPANRAELKVGLQADIDKQWSVRAQVAGQTGSNDFGDLNGSLNLRYNW
NT seq
6120 nt
NT seq
+upstream
nt +downstream
nt
gtgcgaaatatgtatgtcgtggcttcagaactggcgcgaggccacagcaaagttaaagcg
caagtatgcgcgagtgaaacccattctccaaaccaaaagtccgaatatggacaaataata
aaagcaacgcgcgcggcgctggcttgcgccgtggctgcggcgctcggatttttcagcccg
ctggctatggccgataatcaggtatcatatgctgatgcgcagccccacgttctggatgcg
tcaacgccgccgataagctattcgggcaccgatgaaggcgcggcgctatatgtctcgggt
gtcgccaccgtcggctggcagcccaccacggtcacagggacggggctcgtcattgaaaca
agcggaggcggggctgatgatccggatggcggtaagtatgtttccaacgccatttcgctg
gatcattacgctatccttgagcttaccgacgcgaagataaccactacgggtatttatacc
cagggtatttccgcagcggatggcagcacactgaggttaacagacagtacgctaacgatt
gacggcaatttcggcgtaatgacgttgtatacgggttcagaagcaacgctggacggtacc
atcgttgaggcagctaacagcagcagcgcgcaggtgcaacaaggcagtacgctgaacgtg
ctggacggtagcacaatcaccctggcgcaaggccagataaacgttgttgccggaaacacc
gcgacagacgagggttccaccctgaacctgtctgatagctcggtcagctctgcaggtacg
atgagcaccatccagggtaccaataaggccgctcttaatctcaccaacgcgaccataaca
cataccaatgccagcggcgcggcggtacaggccaataacgccactaccctggatattaca
ggcggcaacattacctctgccggtacgggcgtgtatattctggcgtcggacgccaggatc
gacggcgccaccatcaacgccgacggcgacggtatctttataaccagcaaaagaaaactc
gacgggtatgaggatctcaacgcgctgacggtcagcgacgcaaacgtcacctcaaaaact
gtcgcactgaacattgatggcagcacgaccattaacgaccccattgagctcaccaacagc
acctttacggcgccgaccgcgatcaaattaggcagcaaagcgactattcaggccgaaaaa
acgatgctgaccggcaacattgtccagactgacgcgtcatcgtcatcgctctctttaagc
caggggtccacgttaaccggtagtgtagatgcgatgtttactacgctgtcgctcgacgac
accagccagtggaacatgaccgacccgtcaaccgtcggcaatctgaccaacgacggcgat
attacgctgggcaacgcgagcggttcgacaggtacgctgctgacggtggacaataccctg
accttgcaggacggcagccagataaacgcgacgctggataccgccaacagcgcgccaatt
atcaaagccgccaacgtcacgctggacgggacgctgaaccttagctcaacggccaccttt
gtcgcgcccgaaaccgacgaacactttggatcgatcacgctgattgattcgcaaactgca
atcactaccgattttgacagcgtaacactggatgctgacacctccgctatgccggattat
ctgacgatcaacgcgggcgttgatgcgaatgataataccaactacgagttgtctacgggc
ttgagttggtacgcgggcgcaaattctgcgcgcgctgcgcatggcacttttaccgttgat
gcaggcagtacctttaccgtcaccagcgaactggacgaaaccacggcgacctccaactgg
aacggcagcaagctaaccaaacaaggcgacggcacgctgatcctcagcaacaccggcaac
gactacggcgatactgaaattgacggcggcattctggccgccaaagacgccgccgcgctc
ggcactggcgatgtgacgattgcagaaagcgcaacgcttgcgctgagccagggcacgctg
gataacaacgtgaccggcgagggccaaattgtcaaaagcggtagcgatgagctgatcgtg
accggcgataacaactacagcggcggcaccactatttccggcggtacgctgacggctgac
catgcggattcgctgggcagcggcgatatcgacaacagcggcgtgcttaaggtgggcgaa
ggcgagctggaaaacatcctttccggcagcggctcgctggtgaaaaccggcacaggcgag
ctgacgctaagcggcgacaacacttactccggcggcaccaccattaccggcggtacgctg
acggctgaccatgcggattcgctgggcagcggcgatatcgataacagcggcgtgcttaag
gtgggcgaaggcgatctggaaaatacgctttccggcagcggttcgctggtgaaaaccggt
accggcgagctgacgttaagcggcggcaacgattactccggcggcaccaccattatcggc
ggtacgctgacggctgaccatgcggattcgctgggtaccggagctgttgccaacagaggc
gtgcttcaggtcggcgagggcgagctggaaaatacgctttccggcagcggttcgctggtc
aaaaccggtacgggcgaactgacgttaagcggcgataacagttactccggcggcaccacc
attatcggcggtacgctgacggctgaccatgcggattcgctgggtaccggagctgttgcc
aacagcggtgtgcttcaggtcggcgagggcgagctggaaaatacgctttccggcagcggt
tcgctggtcaaaaccggtacgggcgaactgacgttaagcggcgataacagttactccggc
ggcaccaccattatcggcggtacgctgacggctgaccatgcggattcgctgggtaccgga
gctgttgccaacagcggtgtgcttcaggtcggtgagggcgagctggaaaatacgctttcc
ggcagcggttcgctggtgaaaaccggtaccggcgagctgacgttaggcggcgacaacagc
tattccggcgccaccactatcactgacggcacgctgattgccgccaacgtcaacgcgctg
ggcagcggcaatatcgacaacagcggtacgctgatactggatgccaacggcgcatttgag
cttgcgaacgtcaccacccatagcggcgccactaccgcgctggcagcgggcagcaccctt
gacgcgggccagttcacccaggaagacggcagtacgctaagtattgacctcggcgcggcc
accgacgacgccgtgattaccgccgacagcgtcgcgctgggcggcacgctgaatgttacc
ggcattggcagcgttacagacagctggacgcctgaggcatacacctacacgctgattggc
agcgacagcgccattacgaccgatttcgacgatctgaccgtcgcgggaatgaatagagaa
gatgttgacttcctgactatcgacggaaaagtcgatgaagcagacaacacccactatgat
ctgacggcctccctctcctggtatgcggacagagacaacgccactaccgacgcccacggc
acctttaccctgagcgaccctgacggcagctttaacgttgcggctacactgacagacgtt
gacgatacgctggatccgggtagcagatgggacggtaaatcgctgaccaaagaaggcgca
ggcacgctgatcctctctggcgacaacgactacagcggcggcaccaccatcaatgaaggt
acgctggtcgccgccagtacgacggcgctgggcaccggtctggtagacaataatgccacg
ctggtgctggacgcagacggtgaagtcagcgcggtgggcggcatcaccactcatagcggc
gcgacgacccaactggcgctcggcacctcgttggatctcggcgacagcgcgttaattcag
caagatggcagtacgctgaacgttgagctgaatagtgactcagtgcaaccgctgattacc
ggcagcagcgccacgcttggcggcgatttggtcgtcagcgacgccagcctgcaagcgcgc
gcctccgacgcggagttccagtcctttaaactgatggatatgaccagcgatatcagcggc
gactttaccagcctgacgatgaacctcactgacaagccggactatctgaccgtaaccggg
acaatcaatcctgaagatgcgtcagaatatctgcttaccgaagggctgagctggaatgcg
accgccacgtcagcgacgccagcacacggcacgtttaccctgggcgcaggcgacagtttt
gaagtcaccagcgtactgggcgataaaaccggcaacggcgactgggacggtaaatcgctg
accaaactgggcgcgggtaaactgacgctgagcggcgcgaacacctatagcggcgatacc
aacgtacaggaaggcacgctatggctgtccggagacggctcgattggcgagatgggcagc
cagcaggcggtgaacgtcgcctccggggcgaccttcggcggcagcaatggtacgaccgtt
aacggtaaggtgaccaacgaagggacgctggtcttcggcaacagcgaggaaacaggcgct
atcttcaccctcaatggcgatctgatcaacatggggacaatgaccagtggtagcagctcc
agcacgcctggcaatacgctttatgtcgatggcaattacaccggcaacggcggctcgctt
tacctgaataccgtcctgggcgacgatgattcggcaaccgataagttggtcattaccggc
gatgcttccggcaccaccgatctgtacatcaacggcatcggcgatggagcacagaccact
aacggtatcgaagtggtggatgttggcggcgtatcgaccagcgatgcgtttgagctaaaa
aatgaggttaacgccggtctgtatacctaccgtctgtactggaatgaaagtgacaacgac
tggtatctggcgtcaaaagcacagtctgatgatgacgacagcggcggtgatgacacgcct
tcggatggcggtgacgatggcggtaatgtcacgcctccggacgacggcggcgatggcggt
aatgtcacgcctccggacgacggcggcgacggcggcgatgtcacgcctccggaccacggc
ggcgatgtcgcaccgcagtaccgtgcggatatcggcgcgtacatgggcaaccagtggatg
gcgcgcaacctgcaaatgcagaccctctatgaccgcgagggcagccagtatcgtaatgcc
gatggcagcgtatgggcgcgcttcaaagcgggtaaagcggaatccgaggctgtcagcggc
aatatcgatatggacagcaactactcccagttccagttaggcggcgacattctggcctgg
ggtaacggccagcagagcgttaccgttggcgtcatggcgagctacatcaacgccgatacc
gacagcaccggtaaccgtggcgcagacggtagccagttcaccagtagcggcaacgtagac
ggctacaaccttggcgtctatgccacctggtttgccgatgcccaaacgcatagcggcgcg
tatgtcgacagctggtaccaatatggtttctacaacaacagcgtagagagcggtgatgcg
ggatctgaatcttatgattcaaccgctaacgccgtctcgctggaaactggttatcgctac
gatattgcgcttagcaacggtaatactgtcagtctgacgccgcaggcgcaggttgtctgg
cagaattactcagcggatagcgtgaaggataactacggcacccggatcgatggtcaggat
ggcgacagttggacaacgcgtctgggtctgcgtgttgacggcaagctgtacaaaggcagc
cgtacggttatccagccgtttgctgaagctaactggctgcacaccagcgatgatgtgtcg
gtatcgtttgatgatgctacggtgaaacaggatcttccggctaaccgtgcggagctgaaa
gtgggtctgcaggcagatatcgataagcagtggagcgttcgcgctcaggttgccgggcag
actggcagcaatgactttggcgatctgaacggtagcctcaatctgcgctataactggtaa
DBGET
integrated database retrieval system
