Salmonella enterica subsp. enterica serovar Thompson: IA1_16075
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Entry
IA1_16075 CDS
T02868
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sene
Salmonella enterica subsp. enterica serovar Thompson
Pathway
sene02020
Two-component system
sene02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sene00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IA1_16075
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IA1_16075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sene03021
]
IA1_16075
Transcription machinery [BR:
sene03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IA1_16075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AGX11883
LinkDB
All DBs
Position
3345005..3346438
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AA seq
477 aa
AA seq
DB search
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQ
PQDNDPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGPSGDYIDDELPVYQGETTQSL
QDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDEIRESMGDVEVDLDEVEAVLK
RIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQIN
QHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
YMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactcaggcttagccaacaactggcgatgacgcctcagctacaa
caggccatccgtctgttgcagttgtctacgctggaacttcagcaggaactccagcaagcg
ctggaaaataacccgctgcttgagcaaaccgatcttcatgacgaaatcgacactcagcaa
cctcaggataacgatcctctcgataccgccgacgcgctcgaacaaaaagagatgccggaa
gagctgccgcttgacgccagttgggatgaaatttacaccgccgggacgccgtccggcccc
agcggcgattatatcgacgatgagctgcccgtctatcagggcgaaacaacgcagtcgttg
caggattatctgatgtggcaggttgagctaacgcccttctcggacaccgatcgcgctatt
gcgacatctattgtcgatgcggtagatgataccggttatctcaccgtatccctggacgaa
attcgcgaaagcatgggcgatgtagaggtggatctcgatgaggttgaagccgttctgaag
cgcattcagcgttttgatccggtaggcgtcgcggcaaaagatcttcgcgactgtctgctg
atccagctttcacaattcgacaaatccacgccgtggctggaagaggcgcggcttattatc
tgcgatcaccttgatctgctggccaatcacgatttccgcacgttgatgcgcgttacccga
ctgaaagaagaggtgctgaaagaggcggtaaacctgattcagtcgctcgatcccagaccc
ggtcaatcgatccagaccggcgagccggagtacgttatcccggatgtgctggtacgcaag
cataacggtcgctggacggtggagcttaatagcgacagtattccccgtttacagattaac
cagcactatgccgccatgtgcaatagcgcgcgcaacgatgccgacagccagttcatccgc
agtaatttacaggatgcgaaatggctgataaaaagccttgaaagccgcaacgacacgctg
ctgcgcgtcagtcgctgcatcgtcgagcaacagcaagccttttttgaacagggcgaagaa
tatatgaaaccgatggtactggcggatatcgcccaggccgtcgagatgcacgaatccact
atatcccgcgtgaccacgcagaagtatttgcacagcccgcgcggtatttttgaactcaaa
tatttcttttccagccacgtcaataccgaaggcggaggcgaagcctcttccaccgcgatt
cgcgcgctggtgaagaagttaattgcggcggaaaaccccgcgaaaccgctgagcgacagc
aagttaacctctctgctgtcagaacagggtatcatggtggcgcgccgcactgttgcgaag
taccgagagtctttatccattccgccgtcaaaccaacgcaaacagctggtttga
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