Salmonella enterica subsp. enterica serovar Thompson: IA1_17065
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Entry
IA1_17065 CDS
T02868
Name
(GenBank) RTCB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sene
Salmonella enterica subsp. enterica serovar Thompson
Brite
KEGG Orthology (KO) [BR:
sene00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sene03016
]
IA1_17065
Enzymes [BR:
sene01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IA1_17065
Transfer RNA biogenesis [BR:
sene03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IA1_17065
Prokaryotic type
tRNA splicing ligases
IA1_17065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AGX12049
LinkDB
All DBs
Position
complement(3541242..3542456)
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AA seq
404 aa
AA seq
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MNYELMTNQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRDV
GAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDRV
WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQ
QFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSA
RRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHV
ECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattgatgaccaaccagaacgcaccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcccgtcagcaactgatcaatacggcgaaaatgccgtttattttc
aaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagcgtg
atcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggctgtggaatg
aacgcgctgcgtaccagcttaacggcggccgatctaccggaaaacctggcggatctgcgt
agcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcatcgcgatgtg
ggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcaactggaagcggga
tatcagtggttaacgcaaaaatatccgcgctttttgaataccaataactataagcacctg
ggaacgttgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgggta
tggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctattttatc
ggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctggcg
tattttaatgaaggaagcgaatattttgatgattatctgaaagcggtacactgggcacaa
caattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccagcgc
tgcgtggaaaaaccgatcgccctcgatatggacgagataaactgccaccataactatgtg
caaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggcggtttcggcg
cggcgcggtgagttcggtatcattcctggttcgatgggggcgaaaagctttatcgtgcgc
gggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccgggcgtgtgatgagc
cgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcatgtc
gaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagacattgat
gcggtgatggcggcgcagtctgacctggtggaaatcatgtacaccctgcggcaggtggtg
tgcgttaaaggatag
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