Spirosoma endbachense: GJR95_00240
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Entry
GJR95_00240 CDS
T09865
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
senf
Spirosoma endbachense
Brite
KEGG Orthology (KO) [BR:
senf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
senf03016
]
GJR95_00240
Enzymes [BR:
senf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GJR95_00240
Transfer RNA biogenesis [BR:
senf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GJR95_00240
Prokaryotic type
tRNA splicing ligases
GJR95_00240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QHV93557
UniProt:
A0A6P1VPC6
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All DBs
Position
78505..80031
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AA seq
508 aa
AA seq
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METPILIEDILMLGPIPDQLHTTFLRVANGLVQRANYPKEKVMGLLAQMLQNPKKFAFSR
NKVTNLAQSIYDLNKQGISVQLSESGKAYLPIEPLSYVLEANEKQSEKVFDLRTGPLPYA
VFGRDQIEEGALMQMETAASLPVSVAGALMPDAHQGYGLPIGGVLATEANTVIPFAVGVD
IACRMCLSVFDLPPAFLKREPHLLKKSLVEKTKFGIGGEIREKIDESVMDLPEWQATKVI
RDLKDKAYRQLGSSGTGNHFVEWGIVEVYEQDDRLNLPPGEYLALLSHSGSRGFGGNIAN
YYSKLAMQRTKLPKQAAHLAWLDLNTEEGQAYWIGMNLAGEYASANHHEIHKKLAKALGE
KPLTMIENHHNFAWKEQLADGREVIVHRKGATPAGIDVLGIIPGSMTQPGFVVRGRGNAD
SLNSASHGAGRLMSRTQAFNTLTRSQWNKALLEADIQLIGGDLDEAPMVYKNIETVIDAQ
RDLVSVLAKFTPKIVRMADANRKEGRED
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaccaattctaatcgaggatattctgatgctggggccaatccccgatcagtta
catactacatttctgcgggtagcaaacgggctggttcaacgggccaactaccctaaagag
aaagtaatgggtttgctggcacagatgctccagaaccccaaaaaatttgcgttttccaga
aataaagtcacaaatctggctcagtcaatctatgatttgaacaaacagggtatctctgtc
cagcttagcgagtctggaaaagcttatttgcccattgagcccctttcttatgtcctggaa
gccaacgaaaaacagtcggagaaggtgtttgacctgcgtaccggaccgctgccatatgcc
gtttttggccgcgatcagattgaagagggtgcattaatgcaaatggaaacggctgcaagt
ttgccagtttcggtggcgggtgcgctcatgcctgatgcccaccagggctatggtttgccc
attgggggcgtgttggctacggaggcaaacaccgtcattccctttgcggttggggtcgat
attgcctgtcgaatgtgcctctctgtgtttgatttaccgcccgcttttttaaagcgcgaa
ccgcatctactaaaaaagtcattggtagagaaaaccaagtttggaattggtggtgaaatc
cgcgagaagatcgatgagagcgtgatggatttgcccgaatggcaggccacgaaagtaatt
cgcgacttgaaagacaaagcttatcgccagttgggaagctccggtacgggtaatcacttt
gtcgagtggggtattgttgaggtgtatgaacaggatgatcggttgaacctgcctccgggc
gagtatctggcgttgctttcacattccggatcacgcggctttggcggaaacatagcgaat
tactattcaaaactggctatgcagagaaccaaactgcctaagcaggctgctcatctggcc
tggctggacctaaataccgaggaggggcaggcctattggattggtatgaatctagcgggc
gaatatgcctcggccaatcatcacgaaattcataaaaagctggccaaagcactgggtgag
aagccattaacaatgattgagaatcaccacaacttcgcctggaaagagcaactggccgat
ggccgtgaggtgattgttcaccggaaaggggcgactcctgccgggattgatgttctggga
attattccgggatcgatgacgcagccgggctttgttgttcgggggagaggcaatgccgac
tcgctgaactcggcgtcgcatggggccggacggctgatgtcacgcacacaggcgttcaat
acgctgacgcgctctcaatggaacaaagcgttactggaggctgatattcagctcatagga
ggtgatctggatgaggctccaatggtgtataaaaacatcgagacggtcatcgatgctcaa
cgggatctggtgtcggtattggcgaagtttacgcccaaaatcgttcggatggccgacgcc
aatcggaaagaagggcgtgaggattaa
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