Spirosoma endbachense: GJR95_01015
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Entry
GJR95_01015 CDS
T09865
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
senf
Spirosoma endbachense
Pathway
senf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
senf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJR95_01015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senf03019
]
GJR95_01015
Enzymes [BR:
senf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJR95_01015
Messenger RNA biogenesis [BR:
senf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJR95_01015
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
CMS1
Spt4
Motif
Other DBs
NCBI-ProteinID:
QHV93699
UniProt:
A0A6P1VQ19
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All DBs
Position
280676..282010
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AA seq
444 aa
AA seq
DB search
MNFDELNLNKPLLNALSDLGYTTPTTIQEKVFSVVMSGQDVCAIAQTGTGKTFAYLLPCL
RQFQFSKEKLPQLLIIVPTRELVVQVVEAVEKLTTYMNLVVVGVYGGVNMKTQLAEVRQG
IDVLVATPGRLADLLLNGAVKTKAIKKLVIDEFDEMLNLGFRTQLKIILDLLPHKRQNLL
FSATLTDDVDQLVNAYFNKPVRVEAAPVGTPLENIEQTGYEVPNFYTKVNLLRLLIEQDS
TMNKVLVFTATKQLADQLYEQLESDYSDRLGIIHSNKSQNARFNAVEQFKAGTYRLLIAT
DIIARGIDVADVSHVINFDTPDVPESYIHRIGRTGRADKKGIAITFITEAEKEKLAAIEA
LMNYQVPRVPLPEKLTISDELMDDEKPKVYMKTIEVKAPKRDDVGPAFHEKLAKNKKVNV
RRDHAAEKMLKYGRPIKRSGKKNK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgacgaactgaatctgaataaacccctcctgaatgcattgagcgatctcggg
tatacaacgcctacaacgatccaggaaaaggtattctcggtcgttatgtcgggtcaggat
gtgtgcgcaatcgcccaaacgggaacgggaaaaaccttcgcctatctattgccctgtctt
cggcaatttcaattttcgaaggaaaaacttcctcagctattgattatcgttccaacgcgc
gaactggttgttcaggttgttgaagcggtagaaaaactaactacctacatgaatctggtc
gtggttggcgtgtatggtggtgtcaatatgaagacccagctcgcggaggttcgacagggg
attgatgtgttagtggccacgcccggtcgtctggccgacttactattgaatggggccgtg
aaaacgaaggctatcaagaaactcgtgatcgacgagttcgacgaaatgctgaatcttggc
tttcgtacccagctaaaaattattctggatttgcttccccataaacgacagaacctgttg
ttctcggctactcttaccgacgatgtagaccaactggtcaacgcctactttaataagccc
gttcgtgtcgaagcggctccggttggcacaccactggaaaatattgaacagacgggctac
gaagtgccgaacttttatacgaaggtgaatctgttgcgattgctgatagagcaggattcg
accatgaataaagtgctcgtctttacggcgaccaaacaactggccgatcagttgtacgag
cagttagaatccgattattcggatcgactggggattattcactccaataaatcgcagaat
gcccgttttaatgccgtagagcaatttaaggcaggtacgtatcgtcttctgattgcaacg
gatatcattgctcgtggcatcgatgtagccgacgtatcgcatgtcatcaacttcgacacg
ccggacgtgccggagagctacattcaccgcattggacgaaccggcagagccgacaaaaaa
ggcatcgccattacgttcattaccgaagccgaaaaagagaaactggccgccattgaagcg
ctcatgaattaccaggttcctcgagtacctctacccgagaagctcaccatttcagacgaa
ctgatggacgatgagaagcctaaagtgtacatgaaaacgattgaggtaaaggctcccaaa
cgtgacgatgttggaccggcttttcatgagaaacttgcgaaaaacaagaaggtaaatgtt
cggcgcgatcatgccgccgaaaagatgttaaaatatggcagacccatcaagcgtagtggc
aagaaaaataaatag
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