Spirosoma endbachense: GJR95_24210
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Entry
GJR95_24210 CDS
T09865
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
senf
Spirosoma endbachense
Pathway
senf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
senf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJR95_24210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senf03019
]
GJR95_24210
Enzymes [BR:
senf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJR95_24210
Messenger RNA biogenesis [BR:
senf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJR95_24210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
UvrD-helicase
Cas3-like_C_2
Herpes_capsid
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QHV97919
UniProt:
A0A6P1W1Q2
LinkDB
All DBs
Position
complement(6010983..6012326)
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AA seq
447 aa
AA seq
DB search
MQFTDLLLIDPILKALAEEGYSTPTPIQQQAIPILLSRRDLLGCAQTGTGKTAAFAIPIL
QLLNEERSKNPAAPRRIKTLVLTPTRELAIQIDESFAAYGRHLNLRHTVIFGGVSQHSQV
NTLKSGIDILIATPGRLLDLMSQGIISLRDVQFFVLDEADRMLDMGFIHDVKKIIARLPE
RRQSLFFSATMPPDVAKLADTILNKPAKVEVTPVSSTADTIQQAVYFVGREDKRKLLVHV
LNDKQIASALVFARTKHGADKVAKDLLKAGIQAEAIHGNKSQNARQRALSNFKSRQTRVL
VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGNDGIALSFCDQEETDFLKD
IHKLIGKRVPVIEDHPYVLDISVATVTPAQPRQGQGRNGGGSRSGGQGRSNGSSNNGSFR
RGTSSADSANSRSGSNNNRRFGNSGRS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaccgatttattattaattgatccgatcctgaaggcacttgccgaagaagga
tactctaccccgacacccattcagcagcaagccatacccattttgttgagccgccgggat
ttgctgggatgcgcccagactggtaccggcaaaacggccgcttttgctatcccaattctg
caattgcttaacgaagaacggagcaaaaatccagctgccccccggcgtattaaaacactg
gtattgacaccaacccgcgaactagccattcaaatagacgagagttttgctgcctatggc
cgccatctgaaccttcgccatacggttattttcggcggggtttcccagcattcgcaggta
aataccctgaaaagcggtatcgatattctgatcgctacccctggccgtttgctcgacctg
atgagccagggtatcatttcgcttcgtgatgtgcagttttttgtccttgacgaagccgac
cggatgctcgatatgggttttatccatgacgttaaaaagattatcgcccgtttaccagaa
cgtcgtcagtcgctgtttttctcggcaacaatgccgcccgatgtggctaaactggcagac
acaatcctgaacaaaccggctaaagttgaggtcacacccgtatcgtctacagctgatacg
atccagcaggccgtttattttgttgggcgggaagacaagcggaaactgcttgttcatgtg
ctcaacgataagcagattgcatcagctctggtctttgcccgcaccaagcacggagccgat
aaagtagccaaagacttgttgaaagccggaattcaggccgaagccattcacggtaacaaa
tcgcagaatgcccgtcagcgtgctttgtccaatttcaaaagtcgtcagacgagagtactg
gttgctacggatattgctgctcgtggtatcgatgttgatgagctctctcatgtgatcaac
tatgaactgccgaatattcctgaaacctacgttcaccgaattggtcgcacaggccgggct
ggtaacgatggtatcgcgttgtcgttctgtgatcaggaagaaaccgattttctgaaggat
attcataaactgatcggcaaacgcgttccggttattgaagaccatccttatgttcttgac
atatcagtagctactgtaacgccagcgcaaccccgtcagggacagggacggaatggtggt
ggtagtcgcagtggcggtcagggccgtagtaatggctcatcgaataacggttctttccgg
cgcggtactagcagtgctgatagcgcgaacagtcgcagtggaagcaataacaacaggcgg
tttggtaactcaggtcggagttag
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