Spirosoma endbachense: GJR95_25115
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Entry
GJR95_25115 CDS
T09865
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
senf
Spirosoma endbachense
Pathway
senf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
senf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GJR95_25115 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
senf03021
]
GJR95_25115 (rpoB)
03400 DNA repair and recombination proteins [BR:
senf03400
]
GJR95_25115 (rpoB)
Enzymes [BR:
senf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GJR95_25115 (rpoB)
Transcription machinery [BR:
senf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GJR95_25115 (rpoB)
DNA repair and recombination proteins [BR:
senf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GJR95_25115 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QHV98087
UniProt:
A0A6P1W240
LinkDB
All DBs
Position
complement(6202083..6205952)
Genome browser
AA seq
1289 aa
AA seq
DB search
MATNAKISTRKNFATIQPVIGYPDFLDIQVKSFKDFFQLDTPSNQRSEEGLFKVFQENFP
ISDSRENFKLEFIDYSVDPPKYSVDESIDRGLTYSVPLKAKLRLSNNDPDNEDFETIEQE
VFLGNIPYMTEKGSFVINGAERVIVSQLHRSPGVFFSMSKHTNGTKLYSARIIPFKGSWI
EFSTDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKDILDLFGLSEEVPATPANLKKAIGR
RLAARVLRTWTEDFVDEDTGEVVSISRNEVLLERDSAISADDIDVITDSGQKSVILHKED
MNMADYNIIYNTLQKDSSNSEKEAVEQIYRQLRNADAPDEQTAREIIQSLFFSDKRYDLG
DVGRYRINKKLGLDISSEMKVLTTEDIVSIVKYLIGLINSKAVVDDIDHLSNRRVRTVGE
QLYAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQT
NPLAEVTHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVY
AKINSMGFIETPYRIIENGKVSMDKPVMYLTAEEEDTHYIAQANAGIDDKGNFQVDRLKA
RFEGDFPMAEPANVTFMDIAPNQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPLLRPE
APIVGTGLEGRVAVDSRTLVIAEADGVIEFVDSTKIVVRYELDDDQLAVTFDEDRKTYNL
IKFRRTNQDTCINLKPTVLKGQKVKKGDVLCEGYATQAGELALGRNMKVAFMPWQGYNFE
DAIVISERVVREDIFTSIHIEEFELEVRDTKRGEEELTSEIPNVSEETVRNLDENGIVRI
GTEVKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSLKGVVIDTKL
FARPAKEDRGKHKDEVKALMKKYGRELNDFRARMIEKVVTLLDGKTSVGVKHKFGDEIVS
KGVKFNRKNITENLFPDKNSYRDESGYAVPEEANILIDVNLDGWTDDDKLNQMIVHLVKN
YNNRRSEITGRFKRERFTLEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVA
RIVRDEDMPFLEDGTKVDIVLNPLGVPSRMNLGQIYETVLAWAGQKLDRKYATPIFDGAT
EQQVVDELDAAGLPSFGRTYLYNGLTGDRFDQPVTVGIIYMLKLGHLVDDKMHARSIGPY
SLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNILQEILTVKSDDVVGRAKAYEAIVKG
ENLPKPNIPESFNVLVHELRGLALEITLE
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttggctacaaacgcgaaaatcagtacgcgcaaaaattttgcgacgattcagccagtgatt
gggtatccagattttttggatattcaagtaaaatccttcaaagattttttccagcttgat
accccctcgaatcaacgttcggaggaaggattattcaaggtttttcaggaaaacttccca
atttcagactcccgcgagaatttcaagctggagttcattgattactctgttgatccaccg
aaatactccgttgacgagtctattgatcgggggttaacgtattcggtgcctttgaaagcc
aagctgcgcctgtcgaataacgatcctgataacgaggattttgaaacgatcgagcaggag
gtattcctgggtaacattccgtatatgaccgagaaaggctccttcgtcattaacggagca
gaacgggttattgtttcacaattgcaccgttcgccgggtgtgttcttctccatgagcaag
cacacaaatggcaccaaactctattcagcccggattattccatttaaagggtcctggatt
gagttctcgacagacgttaacaacgtcatgtatgcgtacatcgaccggaagaagaaattc
ccggttacaacgctgttacgtgcaattggttttgggtcagataaagacattcttgatctg
tttggtctatcggaagaagtaccggcaacgccagcaaacctgaaaaaagcgatcggtcgc
cggttagctgcccgggtgctgcgtacatggaccgaagacttcgttgacgaggacacaggt
gaagtagtttcgattagccggaacgaagtattgcttgagcgtgactcggctatctcggcg
gacgatatcgatgtaattacggactcaggtcagaagtcagtcatcctgcataaggaggac
atgaatatggccgattataatatcatttataatacgctgcagaaagacagctcaaactct
gaaaaagaggccgttgagcaaatctatcggcagcttcggaatgctgacgcacccgatgag
caaaccgctcgggaaatcatccagagtctgttcttttcagacaaacggtatgatcttggt
gatgtaggccgttaccggattaacaaaaaactcggtctcgacatttcttcggagatgaag
gttctaacgacagaagatattgtttctatcgtgaagtacctgattggcctgattaactcg
aaagccgttgtcgatgatattgaccacctcagcaaccggcgtgtccggactgtaggtgag
cagttatatgcccagtttggtgttggtttggcccggatggcccggacaatcaaagaacgg
atgaacgtacgggataacgaggactttaaacccgttgacctgattaacgcccggactttg
tcgtcggtgatcaattcgttctttggaacaaaccagctgtcgcagttcatggaccagacg
aacccactagccgaagtgacgcacaagcgtcgtatgtcggctcttggacccggtggtctg
tcgcgcgaacgggctggctttgaggttcgtgacgtacactatacgcactacggtcgtctg
tgtaccattgaaaccccggaaggtccgaacatcggtctgatttcgtcactttgcgtctat
gctaaaatcaatagcatgggctttatcgaaacgccatatcgtatcattgaaaacggtaag
gtgtcaatggataagcctgtaatgtacctgacggctgaagaagaagatacgcactatatc
gctcaggcaaacgccggtatcgatgataagggtaacttccaggttgatcgtctgaaggcc
cgtttcgaaggtgacttcccaatggctgagcctgcgaatgtaacattcatggatatagcg
ccgaaccaaattgtatcggtagctgcttccatgattccgttccttgagcacgacgatgcg
aaccgcgccctgatgggatcgaacatgcagcgtcaggcagttccactgctccgcccggaa
gctccaattgtaggaacaggtctggaaggacgcgtagctgttgattcacggacgctggtt
attgcagaagctgatggtgttattgagtttgtcgattcaaccaaaatcgtagttcgctac
gagcttgatgatgatcaactggccgtaacattcgatgaagaccggaagacttataatctg
atcaaattccgccggacgaaccaggatacttgcatcaacctcaaaccaactgtcctgaaa
ggccagaaagtgaagaagggcgatgtactctgcgaaggctatgctacacaggctggcgaa
ttagcacttggccggaacatgaaggttgccttcatgccatggcaagggtacaacttcgag
gatgctattgtgatttcggagcgggttgttcgtgaagatattttcacctcgatccacatc
gaagaatttgaactggaagtacgcgacacgaagcgtggtgaagaggaactaacctccgaa
attccgaacgtgagcgaagaaacggttcgtaacctcgacgaaaacggtatcgttcgtatt
ggtacagaagtgaaggaaggcgatattctgattggtaagattacaccaaaaggagagagc
gatcctacgccagaagaaaaactgctccgtgctatcttcggtgacaaagccggtgacgtg
aaagatgcttctaaaaaggcaccaccgtcattgaaaggcgttgttattgacactaagtta
tttgcgcgtccggctaaagaagaccggggtaagcacaaagacgaagtgaaagcactgatg
aagaaatacggccgtgagctgaatgacttccgtgcccgcatgatcgaaaaagtggttaca
ctgctcgatggcaaaaccagcgtgggtgttaagcataaattcggtgacgaaattgtcagc
aaaggcgtgaagtttaaccgcaagaacattacggaaaacttattccctgacaagaactca
taccgcgacgaaagtggttacgctgtgccagaagaagcgaacatcctgatcgatgtcaat
ttggatggctggacggacgatgataagctgaatcagatgatcgttcatctggtgaagaac
tacaacaatcgtcggagcgaaattacgggccgattcaagcgtgaacgctttacgcttgaa
gttggtgatgaattgccagcaggtatcgtgaaactggctaaggtctatatcgccaagaag
cggaagctgaaagtaggggataagatggccggtcgtcacggtaacaaaggggtagttgcc
cggattgtacgggatgaagacatgccattcctggaagatggaacaaaagtcgacatcgta
ttgaatccgcttggcgtgccatcccgtatgaaccttgggcagatttatgaaaccgtattg
gcatgggctggtcagaagctggatcggaagtatgcaacgccaatttttgacggagctacg
gaacaacaagttgttgatgagttagatgctgccggtttgccatcatttggtcgtacatac
ctctataatggtctgacgggtgaccgcttcgatcaaccagtaacggttggtatcatctac
atgctcaaactcggacacctggtggacgataagatgcacgctcgttcaattgggccctac
tcgctcattacccagcaaccactgggtggtaaggcgcagtttggtggtcaacggttcggg
gagatggaagtatgggcgttggaggccttcggggcatcgaacatcctgcaggaaatcctg
actgtgaagtcggatgacgttgttggccgcgcgaaggcatatgaagcgatcgtgaaaggt
gaaaacctgccgaagccgaatattccggagtcgttcaacgtactcgttcacgaattgcgt
ggtctggcacttgaaattacacttgaataa
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