Spirosoma endbachense: GJR95_34475
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Entry
GJR95_34475 CDS
T09865
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
senf
Spirosoma endbachense
Pathway
senf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
senf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJR95_34475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senf03019
]
GJR95_34475
03009 Ribosome biogenesis [BR:
senf03009
]
GJR95_34475
Enzymes [BR:
senf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJR95_34475
Messenger RNA biogenesis [BR:
senf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJR95_34475
Ribosome biogenesis [BR:
senf03009
]
Prokaryotic type
rRNA helicases
GJR95_34475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UBA
Cas3-like_C_2
AAA_19
Helicase_RecD
UTP25_NTPase-like
UBA_DHX29
Motif
Other DBs
NCBI-ProteinID:
QHV99807
UniProt:
A0A6P1W6Z3
LinkDB
All DBs
Position
8532468..8534534
Genome browser
AA seq
688 aa
AA seq
DB search
MKTKKTNTDSQDETLTVDQSVMEVAQTDNNDLETPVANTEIQNAVAEVISVEDTPVAATT
PDTTGTPKVDPNQILFSSLDISEDLLRAVTDMGFISPSPIQAEAIPPILAGRDVIGQAQT
GTGKTAAFGIPALDLIDVQDRAVQVLILCPTRELALQVAEEIKKLAKYKRGVRIEAIYGG
DSIERQIRSLKSGVHIVIGTPGRVMDHMERNTLKLDHVKMMILDEADEMLDMGFREDIEN
ILDDMPEERQTILFSATMSKPIMQITQKFQKDPVLVKVVKRELTNTNIEQVYFEVKPKAK
VEVMCRLIDMYDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFR
AGTTSILVATDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSMVGRD
EKYRFREIQTYTKVKVEKGVIPSFEDIVGVRKARFIEQIQQAIQESQDLNLYSDMLTQLQ
HAGFSTEQIVAALVKRSMGLEKNEFADQNLGLEDDRRSGRDKYADRGRGDAPGRFDDRRG
GDRGGSRFGDRDRPSYGDRGGNRDRPSFGDRGGNRDRPAFGDRARRADGPDRDRKPYFDR
DEQRAPRERDANMTRLMVSIGRKDYVRPGDIVGAIAGEANIPGNTIGSIDIFDKFTYVDV
PKDVANRVLDVMEGNTIKGRRVNIEVAR
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgaaaaaaacgaacactgatagtcaggacgaaacgctgaccgttgatcaatcg
gtaatggaagtggcacaaacagacaataacgatctggaaacacctgtagccaatacagaa
atacagaacgccgtggcggaagttatatctgtggaagatacacctgtagcagccactaca
cccgacacaaccggtacgcctaaagtcgatcctaaccagatccttttctcaagccttgat
atttcagaagacctattacgggctgttaccgatatgggcttcattagcccgtcgccaatt
caggccgaagcgattccaccaattctggcaggtcgcgacgtcattggtcaggctcaaacc
ggaactggtaaaacagccgcttttggtattcctgctcttgatctgattgatgtgcaggac
cgtgcggttcaggtacttattctttgcccaacccgtgaactggctctgcaggtagcagaa
gaaatcaaaaagctagctaaatacaagcggggtgtccgtatcgaagcgatttatggaggt
gactccattgaacggcagatccggtcccttaaaagtggagttcatatcgtgatcggaacg
cccggtcgtgttatggaccacatggaacgcaatacgcttaaactcgaccacgtcaagatg
atgattcttgatgaggccgatgaaatgctggatatgggctttcgcgaagacatcgagaac
attctggacgacatgcccgaagagcggcaaacgatcctgttctcggctacgatgtcgaag
ccgatcatgcagatcactcagaaattccagaaagaccctgttctggtaaaggtcgtcaaa
cgtgaactgaccaataccaatatcgagcaggtgtattttgaagtgaagccaaaagcaaaa
gttgaggtaatgtgccgtctgatcgacatgtatgacctgaaactattgctggtattctgt
aatacgaagcgtaaggtcgacgagatcgtcgaagatctgcaaattcgtggttatcaggca
gaaggcttacacggtgaccttcgtcaggcacagcggaataacgtcatgagtaagttccgt
gccggtacgaccagcattctggttgctactgacgtagccgctcgtggtatcgacgttgac
gatgtcgatgctgttatcaacttcgatattccgctcgacgaagaatattacgtacaccgc
attggccggacgggccgcgctggcaaatcaggccgggcgttctcgatggtcggtcgtgac
gaaaaataccgcttccgcgaaattcagacctataccaaagtaaaggttgaaaaaggtgta
attccgtctttcgaagacatcgtaggtgttcggaaagctcgctttatcgagcaaatccag
caggcgattcaggaaagccaggatctgaacctgtattcggatatgcttacccaactgcaa
cacgcaggcttctcgaccgaacaaatcgtggcggctctggtgaaacgcagcatgggtctc
gagaaaaacgaatttgccgatcaaaatcttggtctggaagatgatcgtcggtcgggccgt
gacaaatacgccgatcgtggccgtggtgatgcaccaggccgtttcgatgatcgtcgtggt
ggtgaccgcgggggttcgcgttttggcgatagagatcggccgtcttatggcgatcggggt
ggtaaccgcgaccggccaagcttcggtgatcggggtggcaaccgcgaccggccagctttc
ggtgatcgggccagacgtgctgatggaccagaccgcgaccgtaagccttactttgaccgt
gacgaacaacgggcaccgcgtgaacgtgacgcaaacatgactcgtctgatggtgagcatt
ggccgtaaggattacgttcgtccaggcgatattgttggtgccattgctggcgaagccaat
attccaggcaacaccatcggcagcatcgatatcttcgacaaattcacttacgtcgatgtt
cctaaagatgtagccaaccgcgttcttgacgttatggaaggcaatacgatcaaaggacgc
cgtgtaaatattgaagtagcacgctga
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