Streptomyces endophytica: OJ254_02855
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Entry
OJ254_02855 CDS
T09208
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
seng
Streptomyces endophytica
Pathway
seng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJ254_02855 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seng03021
]
OJ254_02855 (rho)
03019 Messenger RNA biogenesis [BR:
seng03019
]
OJ254_02855 (rho)
Transcription machinery [BR:
seng03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OJ254_02855 (rho)
Messenger RNA biogenesis [BR:
seng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OJ254_02855 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA
VAD1-2
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
UZJ29605
UniProt:
A0ABY6P8A8
LinkDB
All DBs
Position
complement(640857..642902)
Genome browser
AA seq
681 aa
AA seq
DB search
MSDTTDLMGARTDGSATTPATDAPAAPATTRRRRSGTGLEGMVLAELQQVASGLGIKGTA
RMRKSQLIEVIKERQAGGSGTAAKADAATEADAKPKRRTTSKARTGEEAAEPAAKADKTE
RTAKDKADKAGAQQQIDIPGQPVSDEQPAGERRRRRATAAAGAPEQAGDLKTDTKVEAKT
DTKTEARTDTATAPQETGEGRPAKGGERQERGDRQDRGQKGDRGDRRQRDRGDRGDRGDR
RKGDAGDGGQGGQRQGRDRDRRDDDDDFEGGRRGRRGRYRDRRGRRGGREDFGNEPQIAE
DDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKDG
ERREKFNALVRLDTVNSMAPEQGRGRPDFGKLTPLYPQERLRLEGESGALTTRIIDLVSP
IGKGQRGLIVAPPKTGKTMIMQAIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEV
ISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSG
GVDSTALYPPKKFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLDR
KLADKRIFPAVDVDASGTRKEEILMGSDELAIVWKLRRVLHALDQQQAIELLLDKMKQTK
SNAEFLLQIQKTTPTAGNGND
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcgcgcaccgatggcagtgccaccacgcccgcc
acggacgctcccgccgcgcctgccaccacccggcgccgccgttccggcaccggccttgag
ggcatggtcctggccgagctgcagcaggtggcctccggcctcggtatcaagggcaccgcg
cggatgcgcaagagccagctgatcgaggtcatcaaggagcgccaggccggaggctcgggc
acggcggccaaggccgacgcagccaccgaggccgacgccaagcccaagcgccgtacgacc
tccaaggcccgcaccggcgaggaggccgccgagccggccgccaaggccgacaagaccgag
cgcaccgccaaggacaaggcggacaaggccggcgcccagcagcagatcgacatccccggc
cagccggtcagcgacgagcagccggccggtgagcggcgccgtcgccgggccaccgccgcc
gcgggcgcccccgagcaggcgggcgacctcaagaccgacaccaaggtcgaggcgaagacc
gacaccaagacggaggcgcgcaccgacaccgccaccgccccgcaggagaccggcgagggc
cggcccgccaagggcggcgagcgccaggagcgcggcgaccgccaggaccggggccagaag
ggcgaccgcggtgaccgccgccagcgcgaccgcggtgaccgtggtgaccgcggtgaccgc
cgcaagggcgacgccggcgacggcggccagggcggccagcgccagggccgggaccgggac
cgccgggacgacgacgacgacttcgagggcggccggcgcggccgtcgcggccgctaccgc
gaccgccggggccgccgcggtggccgcgaggacttcggcaacgagccgcagatcgccgag
gacgacgtcctgatcccggtcgcgggcatcctggacatcctcgacaactacgcgttcatc
cggacctcgggctacctgcccggcccgaacgacgtctacgtctcgctcgcccaggtccgc
aagaacggcctgcgcaagggtgaccacgtcaccggcgcggtccggcagcccaaggacggc
gagcggcgcgagaagttcaacgcgctggtccggctcgacaccgtcaacagcatggcgccc
gaacagggccgcgggcggccggacttcggcaagctgacgcccctttacccgcaggagcgg
ctgcgcctggagggtgagtccggtgcgctgacgacccggatcatcgacctggtctcgccc
atcggcaagggccagcgcggtctgatcgtggccccgccgaagaccggcaagaccatgatc
atgcaggccatcgccaacgcgatcacccgcaacaaccccgagtgccacctgatggtcgtc
ctcgtcgacgagcgtcccgaagaggtcaccgacatgcagcggtcggtcaagggcgaggtc
atctcctcgaccttcgaccgcccggccgaggaccacaccaccgtcgccgagctcgccatc
gagcgggccaagcgcctggtggagctgggccacgacgtcgtcgtcctgctggactcgatc
acccgtctgggccgggcgtacaacctcgccgccccggcctcgggccgcatcctgtccggt
ggtgtcgactccaccgccctctacccgccgaagaagttcttcggtgcggcgcgcaacatc
gaggacggcggctcgctgaccatcctggccaccgcgctggtcgagaccggctcgcggatg
gacgaggtgatcttcgaggagttcaagggcaccggcaacatggagctcaagctcgaccgg
aagctcgccgacaagcgcatcttcccggcggtggacgtggacgcgtccggcacccgtaag
gaagagatcctgatgggcagcgacgagctggccatcgtctggaagctccgccgggtgctg
cacgccctggaccagcagcaggccatcgagctgctgctggacaagatgaagcagacgaag
tccaatgcggagttcctgctgcagatccagaagacgacgccgaccgcgggcaacggcaac
gactga
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