Streptomyces endophytica: OJ254_08030
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Entry
OJ254_08030 CDS
T09208
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
seng
Streptomyces endophytica
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seng03021
]
OJ254_08030
Transcription machinery [BR:
seng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OJ254_08030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_Crp_2
DUF7343
HTH_3
MarR
Sigma70_ECF
HTH_24
HTH_31
DUF134
Motif
Other DBs
NCBI-ProteinID:
UZJ30335
LinkDB
All DBs
Position
1770988..1771824
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AA seq
278 aa
AA seq
DB search
MSVELGSSKVLPAIPAPAPHVHDDDAINTRTLSRSLFLRLASLDKDCAERTYVRDTLIEL
NLPLVRYAAARFRSRNEPMEDIVQVGTIGLIKAIDRFDCERGVEFPTFAMPTVVGEIKRF
FRDTSWSVRVPRRLQELRLALTKASDELSQKLDRSPTVPELALCLGVSEEDVVDGLAVGN
AYTASSLDSPSPEDDGGEGSLADRLGYEDSALEGVEYRESLKPLLAKLPARERQIIMLRF
FANMTQSQIGEEVGISQMHVSRLLTRTLAQLREGLISD
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtagaactgggcagctcaaaggtgcttcctgcgattcccgcgcccgcaccgcac
gtgcatgacgacgacgccatcaacacccgcacgctctcccgctccctgttcctgcggctg
gcctcgctcgacaaggactgcgcggagcgcacgtacgtgcgtgacacgctcatcgaactc
aacctgccgctggtgcgctacgccgcggcccgcttccgcagccgcaacgagccgatggag
gacatcgtccaggtcggcacgatcggtctgatcaaggcgatcgaccgtttcgattgcgaa
cgcggggtggaattcccgaccttcgcgatgccgaccgtcgtcggcgagatcaagcgcttc
ttccgcgacacgtcgtggtcggtgcgggtcccccgccggctccaggagctccggctcgcc
ctcaccaaggccagcgacgagctctcccagaagctcgaccgttccccgaccgtccccgaa
ctcgccctgtgcctgggcgtgtccgaggaggacgtggtcgacggcctggcggtcggcaac
gcctacaccgcctcctcgctggactccccctcccccgaggacgacggcggcgagggctcc
ctcgcggaccgcctcggctacgaggacagcgccctggagggcgtcgagtaccgggagtcc
ctcaagcccctgctggccaaactccccgcccgggaacgccagatcatcatgttgcgcttc
ttcgccaacatgacccagtcgcagatcggcgaagaggtcggcatctcccagatgcacgtc
tcccgcctgctcacccgcaccctggcgcagctgcgcgagggcctgatctccgactga
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