Streptomyces endophytica: OJ254_10590
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Entry
OJ254_10590 CDS
T09208
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
seng
Streptomyces endophytica
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seng03016
]
OJ254_10590
Enzymes [BR:
seng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OJ254_10590
Transfer RNA biogenesis [BR:
seng03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OJ254_10590
Prokaryotic type
tRNA splicing ligases
OJ254_10590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UZJ30716
UniProt:
A0ABY6PAA2
LinkDB
All DBs
Position
2352544..2353737
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AA seq
397 aa
AA seq
DB search
MSYVEVPGAQVPIRMWTDPATVEDVAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVAPG
RLHGFPTAGWEDFWARFEGVADAVKFRRERAVKQMGTLGGGNHFHEICIDEDQSVWIMLH
SGSRNIGKELAEYHMGVAQKLPQNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKHNR
EIMMALTQDVVRREFKKAKVTFGEVISCHHNYVAEEQYDGMDLLVTRKGAIRAGGGEYGI
IPGSMGTGSYIVRGLGNPASFNSASHGAGRKMSRNAAKKRFTTRDLAEQTRGVECRKDSG
VIDEIPGAYKPIEKVIDQQRDLVEVVAHLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgaggtacccggcgcccaggtgcccatccggatgtggaccgacccggcc
acggtcgaggacgtggcgatgcagcaactgcgcaacgtcgccaccctcccgtggatcaag
ggcctggccgtgatgcccgacgtgcactacggcaagggcgccacggtcggctcggtgatc
gcgatgcgcggggcggtctgcccggcggcggtcggcgtcgacatcggctgcggaatgagc
gcggtgaagacctcgctcaccgccaacgacctgcccggcgacctgtcccggctgcgctcg
aagatcgagcaggccattccggtgggccggggcatgcacgacgacccggtcgcccccggc
cggctgcacggtttcccgacggccggctgggaggacttctgggcgcggttcgagggggtg
gcggacgcggtcaagttccgccgcgagcgggccgtcaagcagatgggaacgctcggcggc
ggcaaccacttccacgagatctgcatcgacgaggaccagtccgtgtggatcatgctgcac
tccgggtcgcgcaacatcggcaaggaactcgccgagtaccacatgggcgtggcccagaag
ctgccgcagaaccagggcctggtcgaccgcgacctcgccgtcttcatcgcggacaccccg
cagatggcggcgtaccgcaacgacctcttctgggcgcaggagtacgccaagcacaaccgc
gagatcatgatggcgctcacccaggacgtcgtccgccgggagttcaagaaggccaaggtg
accttcggcgaggtcatctcctgccaccacaactacgtggcggaggagcagtacgacggc
atggacctgctggtgacccgcaagggcgcgatccgggcgggcggtggcgagtacggcatc
atccccggctcgatgggcaccggctcgtacatcgtccgcggcctgggcaacccggcgtcc
ttcaactccgcctcgcacggcgccggccgcaagatgagccggaacgctgccaagaagcgc
ttcacgacgcgcgacctggcggagcagacgcggggcgtggagtgccgcaaggactccggg
gtgatcgacgagatcccgggcgcctacaagccgatcgagaaggtcatcgaccagcagcgc
gacctggtggaggtcgtcgcgcacctcaagcaggtggtgtgcgtgaagggttga
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