Streptomyces endophytica: OJ254_11945
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Entry
OJ254_11945 CDS
T09208
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
seng
Streptomyces endophytica
Pathway
seng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJ254_11945 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seng03019
]
OJ254_11945 (recQ)
03400 DNA repair and recombination proteins [BR:
seng03400
]
OJ254_11945 (recQ)
Enzymes [BR:
seng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OJ254_11945 (recQ)
Messenger RNA biogenesis [BR:
seng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OJ254_11945 (recQ)
DNA repair and recombination proteins [BR:
seng03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OJ254_11945 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
UZJ33988
LinkDB
All DBs
Position
complement(2642531..2644528)
Genome browser
AA seq
665 aa
AA seq
DB search
MDAADAPEAGEAVQVLRRVFGYDAFRGSQQEIIEHVIGGGDAVVLMPTGGGKSLCYQIPS
LVRPGVGVVISPLIALMQDQVDALRALGVRAGFLNSTQDLEERRLVEAEFLAGELDLLYL
APERLRVEQTLSLLDRGKVSLFAIDEAHCVAQWGHDFRPDYLALSMLHERWPDVPRIALT
ATATDATHAEITSRLKMAEARHFVASFDRPNIQYRIVAKSEPKRQLLELLRSEHAGDAGI
VYCLSRASVEKTAQFLVENGIAAVPYHAGLDARTRAEHQARFLREDGLVVVATIAFGMGI
DKPDVRFVAHLDLPKSVEGYYQETGRAGRDGQPSTAWLAYGLQDVVQQRKMIDGSEGDEA
HRRRLSAHLDAMLALCETVQCRRVRLLAYFGQDSAGTTCGNCDTCLSPPQTWDGTVAAQK
LLSTVVRLQRERGQKFGAGQIIDILMGKKTAKVIQFDHDALSVFGVGDDLREAEWRGVVR
QLLAQGLLSVEGDYGTLVLTGTSGEVLRGGREVPMRREPEKAARAAKAKAAKGKRAPVDL
PEEKLPVFEALRGWRARTAKEQGVPAYVIFHDATLREIALLGPATTTELGTVTGVGENKL
VKYGQQILDVLAGRERDGEDAGGGRAAAAADPAPGGAPDAAPAPDAGPEPEDDEALPEPP
DDIDW
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagcagacgctccggaggcgggcgaggcggtgcaggtgctgcgccgcgtcttc
gggtacgacgcgttccggggcagtcagcaggagatcatcgagcacgtcatagggggcggc
gacgccgtcgtcctgatgccgaccggtggcggcaagtcgctctgctatcagattccgtcg
ctggtcaggccgggtgtcggggtcgtgatctcgccgttgatcgcgctgatgcaggaccag
gtcgacgccctgcgggcgctcggggtgcgggccgggttcctcaattcgacgcaggacctg
gaggagcggcggctcgtcgaggcggagttcctggccggcgagctggatctgctgtatctg
gcgccggagcggctgcgggtggagcagacactgagcctgctggaccgcgggaaggtctcc
ctcttcgcgatcgacgaggcgcactgcgtggcgcagtgggggcacgacttccggccggac
tatctggcgctgtcgatgctgcacgagcgctggcccgacgtgccgcggatcgcgctgacg
gccacggcgaccgacgccacgcacgccgagatcacctcccgcctgaagatggcggaggcc
cggcacttcgtcgcgagcttcgaccggccgaacatccagtaccggatcgtggccaagagc
gagcccaagcggcagctgctggagctgctgcggagcgagcacgccggggacgccgggatc
gtctactgcctctcgcgggcctccgtggagaagaccgcgcagttcctggtggagaacggc
atcgccgcggtgccgtaccacgccggcctcgacgcccggacgcgcgcggagcaccaggcg
cggttcctgcgggaggacgggctggtcgtggtcgccaccatcgcgttcgggatggggatc
gacaagccggacgtgcggttcgtggcgcatctggacctgcccaagtcggtggagggctac
taccaggagaccgggcgcgccggccgggacggccagccctcgacggcctggctggcgtac
ggactgcaggacgtggtccagcagcggaagatgatcgacggttcggagggcgacgaggcg
caccggcggcggctgtccgcccacctcgacgcgatgctggcgctgtgcgagacggtgcag
tgccggcgggtccggctgctggcgtacttcgggcaggacagcgccggcaccacctgcggc
aactgcgacacgtgcctgtccccgccgcagacctgggacggcacggtcgccgcgcagaag
ctgctgtcgacggtcgtacggctgcagcgcgagcgcgggcagaagttcggcgcgggccag
atcatcgacatcctgatggggaagaagaccgcgaaggtcatccagttcgaccatgatgcg
ctgagcgtcttcggggtgggcgacgacctccgcgaggccgaatggcgcggtgtcgtacgg
cagttgctggcgcagggactgctctccgtcgagggcgactacggcacgctggtgctcacc
gggacgagcggcgaggtgctgcgcggcgggcgcgaggtgccgatgcggcgggagccggag
aaggccgcgcgggccgcgaaggcgaaggccgcgaaggggaagcgggcgccggtggacctg
cccgaggaaaagctgccggtcttcgaggcgctgcgcggctggcgggcccgtacggccaag
gagcagggcgtgcccgcgtacgtgatcttccatgacgcgacgctgcgggagatcgccctt
ctgggaccggcgacgacgaccgaactcgggacggtcaccggggtcggcgagaacaagctc
gtgaagtacggccagcagatcctggacgtgctggcggggcgggagcgcgacggggaggac
gcgggcggtgggcgcgcggcggcggccgccgatcccgcgcccggcggtgcgcccgacgcc
gcgcccgcgcccgacgccgggcccgagccggaggacgacgaggcgctgccggagccgccg
gacgacatcgactggtga
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