Streptomyces endophytica: OJ254_17790
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Entry
OJ254_17790 CDS
T09208
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
seng
Streptomyces endophytica
Pathway
seng03030
DNA replication
seng03430
Mismatch repair
seng03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OJ254_17790 (dnaE)
03430 Mismatch repair
OJ254_17790 (dnaE)
03440 Homologous recombination
OJ254_17790 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seng03032
]
OJ254_17790 (dnaE)
03400 DNA repair and recombination proteins [BR:
seng03400
]
OJ254_17790 (dnaE)
Enzymes [BR:
seng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OJ254_17790 (dnaE)
DNA replication proteins [BR:
seng03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OJ254_17790 (dnaE)
DNA repair and recombination proteins [BR:
seng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OJ254_17790 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UZJ31804
UniProt:
A0ABY6PD99
LinkDB
All DBs
Position
3993900..3997442
Genome browser
AA seq
1180 aa
AA seq
DB search
MAKPPFTHLHVHTQYSLLDGAARLSDMFKAANEMGMSHIAMSDHGNLHGAYDFFHSAQKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAADKTGLHNLFRL
SSDAYAEGWLQKWPRMDKETIAQWSEGLIASTGCPSGELQTRLRLGQYDEARQAASDYQD
IFGKDRYFLELMDHGIEIERRVREDLLKIGKELGIPPLVTNDSHYTYAHESTAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTEEMYAIDSSDAWQQGCDNTRLVAEQIDTTGMFEKRD
LMPKFDIPEGFTEVTWFQEEVRRGMARRFPGGIPEDRQKQAEYEMDVIIQMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVAYALGITDLDPIEHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLDGITNPSHPRYNEAGEIRAMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAVKMVKK
NKGVDLELLSVPLDDPKTYEMLCRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMDSHTNYALRKNGLQEITPIHPELEEPLKEVLGLTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPEELAKNFVLFQEGAKKKGFSDQAIQALWDVLVPFAGYAFNKA
HSSAYGLVTYWTAYLKANYPAEYMSALLTSVRDDKDKSAVYLNECRRMGIKVLPPNVNES
EANFAAQGDDVILFGLTAVRNVGQNVVDSIIRCRKAKGKYASFPDYLDKVDAVVCNKRTT
ESLIKAGAFDELGHTRKGLTAHYESMIDNVVQVKRKEAEGQFDLFGGMGDDSADDGPGFG
LDVEFSEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAAISQLTGGDYSDGSI
VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFPATYQLVSTQLVEDTVVFVKGR
LDKREDIPRLVAMEMMVPDLSEAGANAPVTITIPTVKVTPPMVEKLGEVLSSHRGSTEVR
IKLQGARKTTVLRLDRHRVTPDPSLFGDLKVLLGPSCLAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtggccaagccgccgttcacgcacctgcacgtgcacacccagtactccctgctggacggt
gcggcgcggttgtcggacatgttcaaggcggcgaacgagatgggcatgtcgcacatcgcc
atgtccgaccacggcaacctccacggcgcctacgacttcttccactcggcgcagaaggcc
ggggtcacgccgatcatcggcatcgaggcgtacgtcgcccccgagtcgcggcgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgcgacgacgtctccggttccggtggt
tacacccacaagaccatctgggcggcggacaagaccggtctgcacaacctcttccggctg
tcctcggacgcctacgccgagggctggctgcagaagtggccgcggatggacaaggagacc
atcgcgcagtggtccgagggcctgatcgcgtccaccggctgcccgtcgggcgagctgcag
acccggctgcgcctgggccagtacgacgaggcgcgccaggcggcctcggactaccaggac
atcttcggcaaggaccggtatttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgaggacctgctgaagatcggcaaggaactcggcatcccgcccctggtgacc
aacgactcgcactacacctacgcccacgagtccacggcacacgacgcgctgctgtgcatc
cagaccggcaagaacctctccgacccggaccgcttccgcttcgacggcacgggctactac
ctcaagtccaccgaggagatgtacgccatcgactcctcggacgcctggcagcaggggtgt
gacaacacccggctggtcgccgagcagatcgacaccaccgggatgttcgagaagcgcgac
ctgatgccgaagttcgacatccccgagggcttcaccgaggtcacctggttccaggaggag
gtccggcgcggcatggcccgccgcttcccgggcggcatccccgaggaccgccagaagcag
gccgagtacgagatggacgtcatcatccagatggggttcccgggctacttcctcgtggtc
gccgacttcatcatgtgggccaagaacaacggcatcgcggtcggccccggccgtggttcc
gcggccggttcgatcgtggcgtacgccctgggcatcaccgacctcgacccgatcgagcac
gggctgatcttcgagcggttcctcaaccccgagcgcgtgtccatgcccgatgtcgacatc
gacttcgacgagcgcaggcgcgtcgaggtgatccggtacgtcacggagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaagatcaaggccaagaacgccatcaaggac
tccgcccgcgtcctcggctacccgtacgcgatgggcgaccgcctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcgacctcgacggcatcaccaacccctcgcacccccgg
tacaacgaggccggcgagatccgcgcgatgtacgagaacgaaccggacgtgaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggtgtgcacgcggccggc
gtgatcatgtccagcgagccgatcgtcgaccacgccccgatctgggtgcggcacaccgac
ggcgtgacgatcacgcagtgggactacccccagtgcgaatcgctcggcctgctgaagatg
gacttcctgggcctgcgcaacctcaccatcatggacgacgccgtcaagatggtgaagaag
aacaagggcgtcgacctggagctgctctccgtcccgctggacgaccccaagacgtacgag
atgctctgccgcggtgacaccctcggcgtcttccagttcgacggcggcccgatgcggtcg
ctgctgcggctgatgaagcccgacaacttcgaggacatttccgccgtctcggccctgtac
cgcccgggcccgatgggcatggactcgcacaccaactacgcgctgcgcaagaacggcctc
caggagatcaccccgatccacccggagctggaggagccgctcaaggaggtcctcggcctc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactccctcggcgaggccgacatcctgcgccgcgtcatgggcaagaagaagcccgaggag
ctggcgaagaacttcgtcctcttccaggagggcgcgaagaagaagggcttctccgaccag
gcgatccaggccctctgggacgtcctggtcccgttcgccggctacgccttcaacaaggcg
cactcctccgcgtacggcctggtcacgtactggaccgcgtacctcaaggcgaactacccc
gccgagtacatgtccgcgctgctgacgtccgtgcgcgacgacaaggacaagtccgcggtc
tatctgaacgagtgccgccgtatgggcatcaaggtgctgccgcccaacgtcaacgagtcc
gaggccaacttcgcggctcagggcgacgacgtgatcctcttcggcctcaccgcggtccgc
aacgtcggccagaacgtcgtcgattcgatcatccggtgccgcaaggccaaggggaagtac
gcctcgttcccggactacctcgacaaggtcgacgcggtggtctgcaacaagcgcaccacc
gaatcgctgatcaaggccggtgccttcgacgagctgggccacacccgcaagggcctgacg
gcgcactacgaatcgatgatcgacaacgtcgtccaggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgacgactccgccgacgacggccccggtttcggt
ctggacgtggagttctccgaggacgagtgggacaagacctatctgctcgcccaggagcgc
gagatgctcggtctgtacgtctccgaccacccgctcttcggcctggagcacgtgctgtcc
gacaaggccgacgccgccatctcccagctcaccggcggcgactactccgacggctcgatc
gtcaccatcggcggcatcatctccggcctgcagcgcaagatgaccaagcagggcaacgcc
tgggcgatcgccaccgtcgaggacctggccggctccatcgactgcatgttcttcccggcc
acctaccagctggtgtccacccaactcgtcgaggacaccgtggtgttcgtcaagggccgc
ctcgacaagcgcgaggacatcccgcggctggtcgccatggagatgatggtccccgacctc
tccgaggccggcgccaacgcccccgtgacgatcaccatcccgacggtcaaggtcaccccg
ccgatggtcgagaagctcggtgaggtgctcagcagccaccgcggctccaccgaggtgcgg
atcaagctccagggcgcccgcaagaccacggtgctccggctggaccggcaccgggtcacc
cccgacccgtcgctcttcggcgacctcaaggtgctgctcggcccgtcctgcctggccggc
tga
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