Streptomyces endophytica: OJ254_18840
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Entry
OJ254_18840 CDS
T09208
Name
(GenBank) DEDDh family exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
seng
Streptomyces endophytica
Pathway
seng03030
DNA replication
seng03430
Mismatch repair
seng03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OJ254_18840
03430 Mismatch repair
OJ254_18840
03440 Homologous recombination
OJ254_18840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
seng03032
]
OJ254_18840
03400 DNA repair and recombination proteins [BR:
seng03400
]
OJ254_18840
Enzymes [BR:
seng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OJ254_18840
DNA replication proteins [BR:
seng03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OJ254_18840
DNA repair and recombination proteins [BR:
seng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OJ254_18840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
BRCT
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
UZJ31957
LinkDB
All DBs
Position
complement(4229550..4230596)
Genome browser
AA seq
348 aa
AA seq
DB search
MLEDRMAAADPIAPKIGQQPGPSTPPTPPAPWPSGYPEGYAVVDVETTGLARDDRIISAA
VYQLDARGEVQDHWYTLVNPQRDPGPVWIHGLTSAVLADAPLFPDVVPELSRRLDGRVLV
AHNAMFDWSMIAREYARAAAVAPVSQRLCTIALSKELGLPLPNHKLESLAAHYGVVQERA
HHALDDARVLAEAFRPSLRRAARENLRLPLLSCQPLTEWSDSPAPRRTDAAPSYRPSTWR
PSRKRPACPYPNPGRYEEGGRLVQGMRVAFSGDTSVDRELLEDRATEAGLHVATSLSRVT
SLLVTNDPDARTSKTVKAAAYGTVVIDEAAFMQLLQDVAPAGSAPASG
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagaccgcatggcagcagccgacccgatcgcgccgaagatcgggcagcagccg
ggaccgtccacgccgccgacgccgccggccccctggccgtccgggtaccccgaggggtat
gcggtggtcgacgtggagacgacgggcctggcgcgggacgaccggatcatctccgcggcc
gtgtaccaactcgacgcccgcggcgaggtccaggaccactggtacaccctggtcaacccg
cagcgggacccgggcccggtgtggatccacggcctcaccagcgcggtgctggccgatgcc
ccgctcttcccggacgtcgtcccggagctgtcccggcggctcgacggccgggtgctggtg
gcgcacaacgccatgttcgactggtcgatgatcgcccgtgagtacgcccgcgccgcggcg
gtcgccccggtgagccagcggctgtgcacgatcgcgctgtcgaaggagctcgggctgccg
ctgcccaaccacaaactggagtcgctggccgcccattacggcgtcgtccaggagcgcgcc
caccacgcgctggacgacgcccgcgtgttggccgaggcatttcgtcccagtttgcggcgg
gccgcccgggagaaccttcggctgccgctgctgagctgccagccgctcacggagtggtcg
gacagccccgcgccccgccggaccgacgccgcaccgtcctaccgcccgtccacctggcgg
ccgtcccgcaagcggccggcctgcccgtaccccaatccggggcgctacgaggagggcggc
cggctcgtccaggggatgcgggtcgccttctccggtgacacctcggtggaccgcgagctg
ctggaggaccgggcgaccgaggccggactgcacgtcgccacgagcctttcccgggtgacc
agcctgctggtcaccaacgacccggacgcccgcacctccaagaccgtcaaggccgccgcg
tacggcacggtcgtgatcgacgaggcggccttcatgcagctgctccaggacgtcgcgccg
gccgggtccgcgcctgcgtccgggtga
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