Streptomyces endophytica: OJ254_30040
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Entry
OJ254_30040 CDS
T09208
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
seng
Streptomyces endophytica
Brite
KEGG Orthology (KO) [BR:
seng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seng03016
]
OJ254_30040
Enzymes [BR:
seng01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OJ254_30040
Transfer RNA biogenesis [BR:
seng03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OJ254_30040
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
UZJ33729
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Position
6730183..6731463
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AA seq
426 aa
AA seq
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MTDAQKTAADTTLRAPGDSPPDPRPAPVPLLEPREGIPPVVATDEALAEVVAAFAAGTGP
VAVDAERASGYRYGQRAYLVQLRREGAGSALIDPVGCPDLSALGEAIGDAEWVLHAATQD
LPCLRDIGMVPTRLFDTELAGRLAGFARVGLGAMVENVLGFALEKGHSAVDWSTRPLPEP
WLRYAALDVELLVDLRDALEEELTRQGKLEWAHQEFAAIAAAPPAPPRKDPWRRTSGMHK
VRRRRQMAVVRELWTARDQVAQRRDVSPGKVLGDAAIVEAALNLPPNSHALAALPGFGHR
MGRRQLEQWQAAVDRARALPENELPQPGQPLNGPPPPRSWADKDPAAAARLTAARTAVTA
LAEELNLPQENLITPDTVRRLCWEPPAAPSRETVAEILTGYGARPWQIEQVAPLLTEALL
TGGEDG
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccaaaagaccgcagcagacacgacactgcgagcccccggagactcccct
ccggatccccgaccggcgccggtccctctcctggagccccgcgagggcatccccccggtg
gtcgcgacggacgaggcgctcgccgaggtggtggcggccttcgcggccggcaccggcccg
gtggcggtcgacgccgagcgcgcctcgggctaccgctacggccagcgcgcctacctcgtg
cagctgcgccgcgagggcgccggcagcgcgctgatcgacccggtcggctgtcccgacctg
tcggccctgggcgaggcgatcggtgacgccgagtgggtgctgcacgccgccacccaggac
ctgccgtgcctgcgcgacatagggatggtccccacccggctgttcgacaccgagctggcc
gggcggctggccggcttcgcccgggtcggcctgggcgcgatggtcgagaacgtcctcggc
ttcgcgctggagaagggccactccgcggtcgactggtccacccgcccgctgcccgagccc
tggctgcgttacgccgcgctcgacgtcgagctgctggtggacctgcgcgacgcgctggag
gaggagctgacccggcagggcaagctggagtgggcccaccaggagttcgcggcgatcgcc
gccgctcccccggcgccaccccgcaaggacccctggcgccgtacgtccggcatgcacaag
gtccgtcggcgccgccagatggcggtcgtacgggagttgtggacggcccgtgaccaggtc
gcccagcggcgcgacgtctccccgggcaaggtgctgggcgacgccgcgatcgtggaggcg
gcgctgaacctcccgcccaacagccacgcgctggccgcgctgcccggcttcggccaccgc
atgggccgtcgccagctggagcagtggcaggccgccgtcgaccgcgcccgcgcgctcccc
gagaacgagctgccgcagcccggccagccgctcaacggccccccgccgccccgctcctgg
gccgacaaggacccggccgcggccgcccggctgacggccgcccgcaccgcggtcaccgcg
ctggccgaggagctcaacctgccgcaggagaacctcatcacgccggacacggtgcgccgg
ctgtgctgggagccgcccgccgcgcccagccgcgagacggtcgccgagatcctcaccggt
tacggcgcccgcccctggcagatcgagcaggtcgccccgctcctcaccgaggccctgctg
acgggcggcgaggacggctga
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