Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069: CFSAN002069_00755
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Entry
CFSAN002069_00755 CDS
T02735
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
senh
Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
Brite
KEGG Orthology (KO) [BR:
senh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senh03019
]
CFSAN002069_00755
Enzymes [BR:
senh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFSAN002069_00755
Messenger RNA biogenesis [BR:
senh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFSAN002069_00755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
AAA_16
ResIII
PhoH
NTPase_1
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AGQ76353
LinkDB
All DBs
Position
complement(2213158..2217060)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEIEQAAAQ
VALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTAEALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITADEQ
QTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDW
HWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIW
SFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWNEAGFTALHEK
VRAELNDTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaatctacgttgacgcttcaggtgttacagcagcggctggatgcactgatg
ctgcgcgacaaacagcgctttgcgcgccgcctgcatggcgtaaagaaagtaaaaaatcct
gatgcgcaacaggccattttccagacgatggcgaaagaaattgaacaggctgcggcgcaa
gtcgccctccgcgaagcggcgcgcccctcaatcacttatccgcaaaatctgcctgttagc
cagaagaaacaggacattctggaagcggtccgcgatcatcaggtagtgatcgtggcaggg
gaaaccggttccggtaaaaccacccagttgccgaaaatttgtatggagctgggacgcgga
attaaaggacttattggacatactcagccgcgtcgcctggcggcgcgcaccgttgctaac
cgcattgccgaagagttgcaaacggagcctggcggctgcatcggctataaagttcgtttc
agcgatcatgtcagtagcaacaccatggtcaaactgatgacggacggtatcctgctggcg
gaaatccagcaggacagactattgatgcagtatgacaccatcattattgatgaagcgcat
gaacgcagcctgaatattgacttcttgctcggctatctgaaagagcttctgccgcgtcgc
cccgatctgaaagtgattattacctctgcgaccatcgacccggaacgcttctcgcgccac
tttaataacgcgccgattatcgaagtctctggccgaacgtatcccgtagaggttcgttat
cgccccatcgtggaagaggctgacgacactgaacgcgatcagctacaggcaattttcgac
gctgttgatgaactggggcgtgaaagtcccggcgatatcctgatttttatgagcggagag
cgggaaatccgcgataccgccgaagccctgaacaagctgaacttacggcataccgaagtg
ttgccgctgtatgcacgcttgtcgaacagcgaacagaaccgcgttttccagtcgcacagc
ggacgccgtatcgtgctggcgactaacgtggcggaaacctcgctgacggtgccgggtatc
aagtatgtgatcgatcctggcactgcgcgcatcagccgctacagctaccgcactaaagtg
cagcgcctgccgattgaaccgatctcacaggcttccgccaaccagcgtaaagggcgttgc
ggacgcgtatcggaagggatttgcattcgtctgtattcggaagatgactttttgtcacgt
ccggaatttaccgacccggaaattctacgtaccaacctggcgtcggttattttgcagatg
accgccctggggctgggtgacattgccgccttcccgtttgtcgaagcgccggataagcgc
aatattcaggatggcgtgcgtttgttggaagagctgggggcgattaccgccgacgaacag
caaacggcatataagctgacgccactgggccgacaattatcccagttgccggtcgacccg
cgcctggcgcgtatggttctggaagcgcaaaaacatggctgtgtgcgcgaagcgatgatc
attacttccgcactctctattcaggatccgcgcgagcgcccagtggataagcagcaggct
tccgatgagaaacaccggcgcttccatgataaggagtccgattttctggcgtttgttaac
ctgtggaattacctcggcgagcaacaaaaggccctgtcgtcgaatcaattccgccgtctg
tgtcgcaccgactatctgaactatttacgcgtgcgtgagtggcaggatatctatacccaa
ctgcgtcaggtggtaaaagaactggggattccggtaaacagcgaacccgcagagtaccgg
gaaattcacgttgcgttgttaacgggactgttgtcgcatatcgggatgaaagatgccgat
aaacaagagtacaccggcgcgcgtaacgcccgattctctattttccccggttccggttta
ttcaaaaaaccgccgaaatggacaatggtcgcagaactggtggagaccagccgtttgtgg
gggcgcatcgctgcccgcattgagccagaatgggtggaaccggtagcccagcacctgatt
aaacgttcatatagcgaaccgcactgggagcgggcgcaaggcgcggtgatggcgacggaa
aaggttactgtctacggtctgccgattgtcgccgcgcgcaaagtgaattacagccagatt
gacccggcgttgtgtcgcgagttgttcatccgccatgcgctggtggagggggactggcaa
acccgtcatgccttcttccgtgagaatctaaaattgcgtgcggaagtcgaggaacttgag
cacaaatctcgccgccgcgatatcctggtggatgacgataccctgtttgagttttatgac
cagcgtattagccatgacgttatttccgcccgccactttgatagttggtggaaaaaaatc
agccgcgagacgccggatctgctcaactttgaaaaaagtatgctgattaaagaaggcgcg
gaaaaaatcagcaaactggattacccgaatttctggcaccagggcaatctcaagctgcgt
ttgagctatcagtttgaaccgggcgcggatgctgacggcgtgaccgtccatattccgttg
ccgctacttaaccaggttgacgagagcggttttgaatggcagatcccggggctgcgccgt
gaattagttattgcgctgattaaatcgttgccaaaaccggtacgtcgcaactttgttccg
gcgccaaactatgctgaagcgtttttaggtcgcgtaacgccgctggagctgccgctgctg
gacgctctggagcgtgaactgcgccggatgaccggcgtcacggtcgatcgggaagactgg
cattgggatcaggtgcccgagcatctgaaaatcacgtttcgcgtggtgaatgacaaaaac
aagaaactgcaggaagggcgttcgctcgccgagcttaaaaatgcgctgaaaggcaaagtg
caggagacgctctcggcggtggcggatgacggcatcgagcagagcgggctgcatatctgg
agtttcggcgagctgccggaaagctacgaacagaaacgcggtaattataaagtgaaggcg
tggccggcgttagtggatgagcgtgacagcgtcgctatcaaattgtttgataatccgctg
gaacaacaacaggcgatgtggtgcggtttacgccgtctgctgttgctcaatattccttca
ccgattaagtatctgcatgagaaattgccgaataaagccaagctggggctgtactttaac
ccgtacggcaaagtactggagttgattgatgactgtatcgcctgcggggtagataagctg
atagatgccaacggcggaccggtgtggaacgaagcaggtttcaccgcgctgcacgaaaag
gtacgcgccgagctgaatgatactgtggtggatatcgcgaagcaggttgagcggatcctg
acgaccgtattcaatatcaataagcgtctgaaagggcgggtggatatgagcatggcgttg
gggctttccgatatcaaggcgcagatgagcggtctggtataccgtggttttgtgactggc
aacggctttaaacgtctcggcgatacgctgcgttatctgcaggcaattgaaaagcggctg
gagaaactggctgtcgatccgcaccgcgatcgggcgcaaatgctgaaagtcgaaagcgtc
cagcaggcgtggcaacaatggataaataaactgcctccagcgcgtcgcgaagatgatgat
gttaaagagatccgttggatgattgaagaactgcgtgtcagttatttcgcccaacagctc
ggtacgccttatcctatttccgataagcgtattttacaggccatggatcagattacggcc
taa
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