Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069: CFSAN002069_08200
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Entry
CFSAN002069_08200 CDS
T02735
Name
(GenBank) RNA helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
senh
Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
Brite
KEGG Orthology (KO) [BR:
senh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senh03019
]
CFSAN002069_08200
Enzymes [BR:
senh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFSAN002069_08200
Messenger RNA biogenesis [BR:
senh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFSAN002069_08200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
HA2_N
Motif
Other DBs
NCBI-ProteinID:
AGQ77521
LinkDB
All DBs
Position
704272..706746
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AA seq
824 aa
AA seq
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MLQCGAKKVNPVEPFVTSLPVAAVLPELLTALKTAPQVLLSAPTGAGKSTWLPLQLLQQG
PVAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRLEVVTEGVLT
RMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQGLRDDLRLLIMSATLDNDRLC
QRLPDAPTIVSEGRAFPVERRYQPLAAHLRFDEAVAMATAELLRNENGSLLLFLPGVGEI
QRVHEHLASRVGSDVLLCPLYGALSLEAQRKAIVPAPAGMRKVVLATNIAETSLTIEGIR
LVVDSAQERVARFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHLLAKEQAERAA
AQSDPEILHSDLSGLLMEVLQWGCHDPTSLFWLDRPPEVNLQAARRLLLMLGALEGERLS
ARGRKMAAMGNDPRLAAMLVNADEGDSAATAAMLAAILEDPPRGGGTDLSVVFSRRQPGW
QQRSQQLLKRLQVRNGEPDSALIMPLLARAFSDRIARRRGQEGRYQLANGMGAMLDADDA
LGRHEWLIAPLLLQGSASPDARILLAQPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAW
RRMRIGQLTVSVQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLP
EYDWPAVDEASLLATLENWLLPHMTGVQSLRSLKSLNVTQALRGLLDYAMLQRLDSELPG
HYTVPTGSRITIRYHEDNPPALAVRMQEMFGEAKTPTIAQGRVPLVLELLSPAQRPLQIT
RDLSAFWQGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgcggcgcaaagaaagttaaccccgtggagccgtttgtgacgtcattgccc
gttgccgccgtattgcctgaattgttgacagccctaaaaaccgcgccgcaggttttgttg
tccgcgcctaccggggcggggaaatccacctggttgccgttgcaactcctgcaacagggg
ccggttgctggaaaaatccttctgcttgaaccgcgtcgtctggcggcgcgtaatgtcgcg
cagcgtctggcggaagcgttgaatgaaaagcctggcgaaacggtaggttaccggatgcgc
gcgcaaagctgcgtggggccgcgtacccggctggaagtggtgaccgaaggcgtattgact
agaatgattcagcgcgatcccgaattacgcggcgtggggctggtgatactggatgaattt
catgagcgcagtttacaggcggatttagcgttggcgctgttgctggatatccagcaaggg
ctccgtgacgatctcaggctgttaatcatgtcagcgacgctggataacgacaggctttgt
cagcgactgcctgatgcgccgacgatcgtctcggaggggcgcgcgtttcccgtggagcga
cgttatcagccgctcgcggcgcatttgcgttttgatgaagccgtcgcgatggcgacagcg
gaactgctgcgcaatgaaaacggttcgctgctgctatttttacccggcgtaggcgaaata
cagcgcgttcatgaacatctggcgtcgcgggtagggagcgatgtcctgctttgtccgctg
tatggcgcattgtctctggaagcgcaacgcaaagcgattgttcccgcccccgccgggatg
cgtaaagtggtgttggcgactaacattgccgaaaccagtttgacgattgaagggattcgt
ctggtcgtcgatagcgctcaggagcgcgtggcgcgattcgacgcgcgaacgggactgacg
cggctggttacgcagcgtatcagtcaggcatcaatgacgcagcgcgcggggcgcgccgga
cgactggcgccgggaatctgtttacatctgctggccaaagaacaggcggagcgggcggcg
gcgcaaagcgatccggaaatcttacacagcgacctctccggtttgttgatggaggtgttg
cagtggggatgtcacgatccgacatcgcttttctggctggacaggccgccggaggtgaat
cttcaggccgcccgccgtttattattgatgttaggcgcgctggagggcgagcggttaagc
gcgcggggccggaaaatggcggcaatgggtaacgatccgcgcctggcggcgatgttagtc
aacgccgacgagggcgacagcgccgccaccgccgccatgctcgcggccatccttgaggac
ccgccgcgcggcggcggtacggatttaagcgtagtattttcgcggcgacagccgggctgg
cagcagcgtagccagcagcttttaaaacggctgcaggtgcgtaatggcgagccggatagc
gcgcttattatgccgctgttggccagagcgtttagcgaccgcatcgcgcggcgtcgtggt
caggaagggcgctatcagttagccaatggtatgggcgcgatgttagatgcggatgacgcg
ttgggacgtcatgaatggctgatcgcgccgctgttactgcaaggtagcgcctcgccggac
gcccgaatattgttggcgcagccgctggatattgcctcgctgattcaggcgtgtcctgat
ttactgcgccagtccgacacggttgaatgggacgaggcgcagggaacgttgaaagcatgg
cgcagaatgcgtattggacagttgacggttagcgttcagccactggcgaagccgtctgaa
gaggagcttcatcaggcgatgctgaacggcatccgcgataaaggtctgtccgtccttaac
tggacgccggaagcggagcagttccgtctgcgtctgcactgtgcggcgaaatggctgccg
gaatatgactggcctgccgtggatgaggcgtcgctgctggcgactctggaaaattggttg
ctgccgcacatgacaggcgtacagtcgttacggagtctgaaatctctgaatgtgactcag
gcgttacggggactgcttgactatgccatgttgcaacgtctggatagtgaactgcctggg
cattacactgtgccgacgggaagccgaataacgattcgttatcatgaagataacccgccc
gcgctggcggtcagaatgcaggaaatgtttggcgaagcgaagaccccaaccatcgctcag
ggccgcgtgccgctggtgctggaactgctttcgccagcgcagcgaccgctacagattacg
cgcgatttaagcgctttctggcagggggcgtatcgcgaagtgcaaaaagagatgaagggc
cgttaccccaaacatgtctggccggacgatccggcgaatacggccccaacgcggcgcacg
aagaagtattcgtga
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