Salmonella enterica subsp. enterica serovar Typhimurium 138736: CY43_16740
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Entry
CY43_16740 CDS
T03493
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
seni
Salmonella enterica subsp. enterica serovar Typhimurium 138736
Pathway
seni02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
seni00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CY43_16740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
seni03021
]
CY43_16740
Transcription machinery [BR:
seni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CY43_16740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AHX78925
UniProt:
A0A0H3T9V6
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Position
3409667..3411514
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AA seq
615 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTA
THVGSELSQEDLDDDEDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAK
GRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
attgaagatatcatccaaatgatcaacgacatgggtattcaggtaatggaagaagcgcct
gatgccgatgatctgctgctggctgaaaataccaccagcaccgatgaagatgcggaagaa
gctgctgcacaagttctgtccagtgttgagtctgaaatcggtcgtacgactgacccggta
cgcatgtatatgcgtgaaatgggcactgttgaactgttgacccgggaaggcgaaatcgac
atcgctaaacgtatcgaagacgggatcaaccaggttcaatgctccgttgccgaatacccg
gaagccattacctatctgctggaacagtacgatcgcgttgaggctgaagaggctcgtttg
tccgatcttatcaccggctttgtcgatccgaacgcggaagaagagatggcgccgaccgca
actcacgtcggttctgaactctcccaggaagacctggatgatgacgaagacgaagatgaa
gaagacggcgacgatgacgccgccgatgacgacaacagcattgaccctgaactggcacgc
gaaaaattcgctgagctgcgcgcgcaatacgtcgttacgcgcgacaccatcaaagcgaaa
ggccgcagccatgctgccgcgcaggaagagattctgaagctgtctgaagtgttcaaacag
ttccgtctggtaccgaagcaattcgactatctggtcaacagtatgcgcgtgatgatggat
cgcgtgcgtacccaggaacgtctgatcatgaagctctgcgtcgagcagtgcaaaatgccg
aagaagaactttatcacgctgtttaccggtaatgaaaccagcgaaacctggttcaatgcc
gctatcgcgatgaacaaaccgtggtcggaaaaactgcacgatgtcgcggaagaagtgcaa
cgctgcctgcaaaaactgcggcagattgaagaagagaccggtctgaccatcgaacaggtg
aaagacatcaaccgtcgcatgtccatcggggaagcgaaagcccgccgtgcgaagaaagag
atggttgaagcgaacttgcgtctggttatttctatcgctaagaaatacaccaaccgtggc
ttgcaattccttgatctgattcaggaaggcaacatcggtctgatgaaagcggtagataag
ttcgaataccgtcgcggctacaaattctccacctatgcaacctggtggatccgtcaggcg
atcacccgttctatcgccgatcaggcgcgcaccatccgtattccggtgcatatgattgag
accatcaacaagctcaaccgtatttctcgccagatgctgcaagagatgggccgcgagcca
acgccggaagagctggctgaacggatgctgatgccggaagataaaattcgtaaggtgcta
aagattgccaaagagccaatctccatggaaacgccgatcggcgacgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctgccgctggactctgccactaccgag
agcctgcgtgccgccactcacgacgttttggctggcctgaccgctcgtgaagcgaaagtg
ctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaa
cagttcgatgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactg
cgccacccgagccgttctgaagtgctgcgcagcttcctcgacgattaa
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