Salmonella enterica subsp. enterica serovar Typhimurium 138736: CY43_18290
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Entry
CY43_18290 CDS
T03493
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
seni
Salmonella enterica subsp. enterica serovar Typhimurium 138736
Brite
KEGG Orthology (KO) [BR:
seni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
seni03016
]
CY43_18290
Enzymes [BR:
seni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CY43_18290
Transfer RNA biogenesis [BR:
seni03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CY43_18290
Prokaryotic type
tRNA splicing ligases
CY43_18290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AHX79215
UniProt:
A0A0M2J019
LinkDB
All DBs
Position
complement(3714726..3715940)
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AA seq
404 aa
AA seq
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MNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRDV
GAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDRV
WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWAQ
QFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSA
RRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHV
ECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattaatgaccacccagaacgcaccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcccgtcagcagctgatcaatacggcgaaaatgccgtttattttc
aaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagcgtg
atcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtggaatg
aacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggatctgcgt
agcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcatcgcgatgtg
ggcgcatggggaaacccgcccgccaacgttaatgaaaaatgggcgcaactggaagcggga
tatcagtggttaacgcaaaaatatccgcgctttttgaataccaataactataagcacctg
ggaacgttgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgggta
tggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctattttatc
ggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctggcg
tattttaatgaaggaagcgaatattttgacgattacctgaaagcggtacactgggcacaa
caattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccagcgc
tgcgtggaaaaaccgatcgccctcgatatggacgagatcaactgccaccataactatgtg
caaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggctgtttcggcg
cggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtgcgc
gggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccggacgtgtgatgagc
cgaacgaaagcgaagaaactgtttagcgttgacgatcaaattcgtgccaccgcgcatgtc
gaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatattgat
gcggtgatggcggcgcagtccgacctggttgaaatcatgtacgccctgcggcaggtggtg
tgcgttaaaggatag
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