Salmonella enterica subsp. enterica serovar Javiana: CFSAN001992_02910
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Entry
CFSAN001992_02910 CDS
T02479
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
senj
Salmonella enterica subsp. enterica serovar Javiana
Brite
KEGG Orthology (KO) [BR:
senj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
senj03032
]
CFSAN001992_02910
03400 DNA repair and recombination proteins [BR:
senj03400
]
CFSAN001992_02910
Enzymes [BR:
senj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CFSAN001992_02910
DNA replication proteins [BR:
senj03032
]
Prokaryotic type
DNA Topoisomerases
CFSAN001992_02910
DNA repair and recombination proteins [BR:
senj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CFSAN001992_02910
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Zn_ribbon_recom
MetOD1
Motif
Other DBs
NCBI-ProteinID:
AGF80906
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Position
541394..543004
Genome browser
AA seq
536 aa
AA seq
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MRSTWWRGYIGDNFGKKYLPDNPNQYASKENSQEAHEAIRPSDVAVMAESLKDMEADAQK
LYQLIWRQFVACQMTPAQYDSTTLTVGAGEFRLKARGRILRFDGWTKVMPALRKGDEDRT
LPAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGY
VRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSLDQVANHQAEWKAVLDNFFS
DFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYALSPKER
CKTTINLVPENEVLNVLEGDDAETNALRAKRRCQKCGTAMDSYLIDPKRKLHVCGNNPTC
DGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNDECKNTRKILRNGEVA
PPKEDPVPLPELPCEKSDAYFVLRDGAAGIFLAANTFPKSRETRAPLVEELYRFRDRLPE
KLRYLADAPQQDPEGNKTVVRFSRKTKQQYVAAEKDGKATGWSAFFVDGKWVEGKK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcaacatggtggcgcggttatattggcgataatttcggcaagaaatacctgccg
gataacccgaaccagtacgccagcaaagaaaactctcaggaagcgcacgaagcgatccgt
ccttccgacgttgctgtcatggcggagtcgctgaaagacatggaggctgacgcgcagaag
ttgtatcaactaatttggcgtcagtttgtcgcctgtcagatgacgccagcacaatatgac
tctactacgcttaccgttggcgcaggcgagttccgcctgaaagcgcgtgggcgtattttg
cgctttgacggctggacaaaagtgatgccggcgctgcgtaaaggcgatgaagatcgcaca
ttgcctgccgtgaataagggcgatgcgctgacgctacttgaattgacgcctgctcagcac
tttactaaaccgccagcccggtttagcgaggcttctctggttaaagagcttgagaagcgc
ggtattggtcgtccgtctacctatgcgtcgattatctcgaccattcaggatcgcggctat
gttcgtgttgaaaaccgtcgcttctatgcggaaaaaatgggtgaaatcgtcaccgatcgg
ctggaagaaaacttccgcgaattgatgaactacgattttaccgcgcagatggaagatagt
ctggatcaggttgcaaatcaccaggccgagtggaaagcggtactggataacttcttcagc
gattttactcagcagctcgataaagccgagaaagatccggaagaaggggggatgcgccct
aaccagatggtgctgaccagcatcgactgtccaacctgtggccgtaaaatgggaattcgt
actgccagtacgggggttttccttggatgttcaggttatgcgctttcgccgaaagagcgt
tgtaaaacgaccattaacctggtgccggaaaatgaagttctgaacgtgctggaaggcgac
gacgccgaaaccaacgccctgcgcgccaaacgtcgctgtcagaagtgcggtacggcgatg
gacagctatctgatcgatccgaagcgtaaattgcatgtgtgtggtaataacccgacctgt
gatggctacgagattgaagaaggcgagttccgcatcaaagggtatgacggcccgatcgtt
gagtgtgagaaatgtggttccgaaatgcacctgaaaatggggcgttttggtaagtacatg
gcctgtactaacgacgaatgtaaaaatacccgtaagatcttgcgtaacggcgaagttgcg
ccgccgaaggaagatcctgttccattgccggaactgccgtgtgaaaaatcggacgcgtac
tttgtgctgcgcgatggcgccgcagggatattcctggcggccaatacgttcccgaaatca
cgcgaaacgcgcgcgccattagtcgaggagctataccggttccgcgatcgcctgccggaa
aaactgcgttatctggcggatgcgccacagcaggatccggaaggcaataaaaccgttgtt
cgctttagccgcaaaacaaaacagcagtacgttgcggcggaaaaagacgggaaggcgacg
ggatggtcagcattcttcgtcgacggcaagtgggttgaaggcaagaaataa
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