Salmonella enterica subsp. enterica serovar Javiana: CFSAN001992_13895
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Entry
CFSAN001992_13895 CDS
T02479
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
senj
Salmonella enterica subsp. enterica serovar Javiana
Pathway
senj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
senj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFSAN001992_13895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
senj03019
]
CFSAN001992_13895
03400 DNA repair and recombination proteins [BR:
senj03400
]
CFSAN001992_13895
Enzymes [BR:
senj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFSAN001992_13895
Messenger RNA biogenesis [BR:
senj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFSAN001992_13895
DNA repair and recombination proteins [BR:
senj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CFSAN001992_13895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGF83073
LinkDB
All DBs
Position
complement(2857941..2859770)
Genome browser
AA seq
609 aa
AA seq
DB search
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIP
ALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLY
IAPERLMLDNFLDHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMAL
TATADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLNDAQIAL
STIGRVNQRFGMGYVVEVIRGANNQRIRDFGHDKLKVYGMGREKSHEHWVSVIRQLIHLG
LVMQNIAQHSALQLTDAARPVLRGDVPLKLAVPRIIALKPRVMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggaatcaggggccaaacaggttttgcaggaaacc
tttggctaccaacagtttcgcccgggccaggaagcgattattgatactgcgctctccggt
cgcgactgtctggtcgtcatgcccaccggcggcggcaaatctctgtgctatcaaatcccc
gcgttgttgctggatggattgaccgtcgtcgtttcgcctctgatctcgttgatgaaagac
caggtcgatcagctactggcgaacggtgtggcggcggcctgtctgaactccactcaaagc
cgcgagcagcagcttgaggtgatggcggggtgccgtaccggacagattcgtctgctgtat
attgcgccggaacgcctgatgctggacaactttcttgatcatctggcgcactggaatccg
gtattgctggcggtggatgaagcgcactgtatctcgcaatgggggcatgatttccgtccg
gaatatgcggctctcggtcagcttcgccagcgttttcccgctttgccgtttatggcattg
accgccaccgccgacgacaccacgcgccaggatattattcgtctgcttgggcttaacgat
ccgttaatccagatcagtagctttgaccgaccgaatatccgctacatgctgatggagaag
tttaagccgctcgaccagctaatgcgctatgttcaggagcaacgcggcaaatcgggtatc
atctactgtaacagccgggcgaaagtggaagataccgctgcgcgcttgcaaagtcgcggc
attagcgcggcggcctatcatgcggggctggaaaacgctattcgcgccgatgtgcaggaa
aaatttcagcgcgacgatctgcaaatcgtggtggcgaccgtcgcttttggaatgggcata
aacaaacctaacgtacgtttcgtcgtgcatttcgatatcccgcgcaatattgaatcctac
tatcaggaaacgggccgcgccgggcgcgacggactgcctgcggaagccatgctattttac
gatccggctgacatggcctggctacgtcgttgtctggaagagaaaccagccggacagctt
caggatattgaacgacataaactgaatgcgatgggcgcttttgccgaagcgcaaacctgc
cgccgcctggtattacttaattactttggcgaaggccgacaagaaccgtgcggtaactgc
gatatctgtctcgatccgcccaaacaatatgatggcttaaacgatgcccagattgcgctt
tctaccattggtcgggttaaccagcgttttggcatgggctacgttgtcgaggtgatccgc
ggcgcgaataaccaacgcatccgcgatttcggtcatgacaaactcaaggtttatggcatg
ggacgcgaaaagagccatgagcactgggtgagcgtgattcgccagctcattcatctgggg
ctggtaatgcaaaatattgcgcagcactccgcattacagttgacggatgccgcgcgtccg
gtactccgtggggacgttccgctaaagcttgcggtgccgcgcatcatcgccctcaaaccc
cgcgtgatgcagaaatcgttcggcggtaattacgatcgcaaattgttcgctaagttgcgc
aagctgcgtaaagctatcgctgatgaagagaatatcccgccgtatgtggtctttaacgac
gccacgttgatagagatggcggaacagatgccggtttccgccagcgagatgttaagcgtt
aacggggttgggatgcgcaaactggagcgcttcgggaaagaattcatggcgctcatccgc
gcgcatgtcgatggtgatgacgaagagtag
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